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Structure of a corrinoid (factor IIIm)-binding protein from Moorella thermoacetica
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 modified microbatch 6.7 291 0.1M Sodium HEPES, 1.6M ammonium sulfate, 30% 1,6-hexanediol, pH 6.7, modified microbatch, temperature 291K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.689 α = 90 b = 62.738 β = 90 c = 34.543 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.5798 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 0.077 13939
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 38.6 0.216
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 41.63 12184 528 91.51 0.1757 0.17425 0.1851 0.2101 0.2215 RANDOM 14.075
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.32 -1.09 0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.32 r_dihedral_angle_3_deg 10.938 r_dihedral_angle_1_deg 4.929 r_dihedral_angle_4_deg 3.964 r_scangle_it 3.029 r_mcangle_it 2.299 r_scbond_it 2.077 r_angle_refined_deg 1.954 r_mcbond_it 1.861 r_angle_other_deg 0.753
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.32 r_dihedral_angle_3_deg 10.938 r_dihedral_angle_1_deg 4.929 r_dihedral_angle_4_deg 3.964 r_scangle_it 3.029 r_mcangle_it 2.299 r_scbond_it 2.077 r_angle_refined_deg 1.954 r_mcbond_it 1.861 r_angle_other_deg 0.753 r_mcbond_other 0.466 r_symmetry_vdw_other 0.231 r_nbd_refined 0.205 r_nbd_other 0.171 r_nbtor_refined 0.162 r_symmetry_vdw_refined 0.102 r_xyhbond_nbd_refined 0.096 r_nbtor_other 0.081 r_symmetry_hbond_refined 0.075 r_chiral_restr 0.067 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 909 Nucleic Acid Atoms Solvent Atoms 72 Heterogen Atoms 96
Software Software Software Name Purpose SOLVE phasing RESOLVE phasing DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection SHELXD phasing