1Y0M

Crystal structure of of the SH3 domain of phospholipase C Gamma-1

PDB DOI: https://doi.org/10.2210/pdb1Y0M/pdb

Classification: HYDROLASE
Organism(s): Rattus norvegicus
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2004-11-15 Released: 2006-02-21
Deposition Author(s): Mariuzza, R., Sangwoo, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.20 Å
R-Value Free: 0.177
R-Value Work: 0.151

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of of the SH3 domain of phospholipase C Gamma-1

Mariuzza, R., Sangwoo, C.

To be published.

Macromolecule Content

Total Structure Weight: 7.17 kDa
Atom Count: 648
Modelled Residue Count: 61
Deposited Residue Count: 61
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1	A	61	Rattus norvegicus	Mutation(s): 1 Gene Names: Plcg1 EC: 3.1.4.11
UniProt
Find proteins for P10686 (Rattus norvegicus) Explore P10686 Go to UniProtKB: P10686
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P10686
Protein Feature View Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.20 Å
R-Value Free: 0.177
R-Value Work: 0.151
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 28.748	α = 90
b = 30.978	β = 92.12
c = 29.753	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
MOLREP	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2006-02-21

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2006-02-21
Type: Initial release
Version 1.1: 2008-04-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-10-11
Changes: Refinement description
Version 1.4: 2021-10-20
Changes: Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.