1Y0M | pdb_00001y0m

Crystal structure of of the SH3 domain of phospholipase C Gamma-1

• PDB DOI: https://doi.org/10.2210/pdb1Y0M/pdb

• Classification: HYDROLASE
• Organism(s): Rattus norvegicus
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2004-11-15 Released: 2006-02-21 
• Deposition Author(s): Mariuzza, R., Sangwoo, C.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.20 Å
• R-Value Free: 
  0.177 (Depositor) 
• R-Value Work: 
  0.151 (Depositor), 0.150 (DCC) 

Literature

Crystal structure of of the SH3 domain of phospholipase C Gamma-1

Mariuzza, R., Sangwoo, C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 7.17 kDa 
• Atom Count: 648 
• Modeled Residue Count: 61 
• Deposited Residue Count: 61 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1	A	61	Rattus norvegicus	Mutation(s): 1  Gene Names: Plcg1 EC: 3.1.4.11
UniProt
Find proteins for P10686 (Rattus norvegicus) Explore P10686  Go to UniProtKB:  P10686

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.20 Å
• R-Value Free:  0.177 (Depositor) 
• R-Value Work:  0.151 (Depositor), 0.150 (DCC) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 28.748	α = 90
b = 30.978	β = 92.12
c = 29.753	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
MOLREP	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-02-21 
Deposition Author(s): Mariuzza, R., Sangwoo, C.

Revision History  

• Version 1.0: 2006-02-21
  Type: Initial release
  
• Version 1.1: 2008-04-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2017-10-11
  Changes: Refinement description
• Version 1.4: 2021-10-20
  Changes: Database references
• Version 1.5: 2024-02-14
  Changes: Data collection