1XNG

Crystal Structure of NH3-dependent NAD+ synthetase from Helicobacter pylori


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.229 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of NH3-dependent NAD+ synthetase from Helicobacter pylori

Kang, G.B.Kim, Y.S.Im, Y.J.Rho, S.H.Lee, J.H.Eom, S.H.

(2005) Proteins 58: 985-988


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
NH(3)-dependent NAD(+) synthetase
A, B
268Helicobacter pylori (strain ATCC 700392 / 26695)Gene Names: nadE
EC: 6.3.1.5
Find proteins for O25096 (Helicobacter pylori (strain ATCC 700392 / 26695))
Go to UniProtKB:  O25096
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ATP
Query on ATP

Download SDF File 
Download CCD File 
A, B
ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
 Ligand Interaction
DND
Query on DND

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Download CCD File 
A, B
NICOTINIC ACID ADENINE DINUCLEOTIDE
DEAMIDO-NAD+
C21 H27 N6 O15 P2
SENPVEZBRZQVST-HISDBWNOSA-O
 Ligand Interaction
MG
Query on MG

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Download CCD File 
A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.229 
  • Space Group: P 31
Unit Cell:
Length (Å)Angle (°)
a = 63.403α = 90.00
b = 63.403β = 90.00
c = 125.688γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data reduction
SCALEPACKdata scaling
CNSrefinement
HKL-2000data collection
CNSphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2005-04-05
    Type: Initial release
  • Version 1.1: 2008-04-30
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance