1VI7

Crystal structure of an hypothetical protein

PDB DOI: https://doi.org/10.2210/pdb1VI7/pdb

Classification: Structural genomics, unknown function
Organism(s): Escherichia coli
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2003-12-01 Released: 2003-12-30
Deposition Author(s): Structural GenomiX

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.332
R-Value Work: 0.261

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of YIGZ, a conserved hypothetical protein from Escherichia coli k12 with a novel fold

Park, F., Gajiwala, K., Eroshkina, G., Furlong, E., He, D., Batiyenko, Y., Romero, R., Christopher, J., Badger, J., Hendle, J., Lin, J., Peat, T., Buchanan, S.

(2004) Proteins 55: 775-777

PubMed: 15103642 Search on PubMed
DOI: https://doi.org/10.1002/prot.20087
Primary Citation of Related Structures:
1VI7

Macromolecule Content

Total Structure Weight: 23.27 kDa
Atom Count: 1,620
Modelled Residue Count: 206
Deposited Residue Count: 217
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein yigZ	A	217	Escherichia coli	Mutation(s): 0 Gene Names: yigZ, b3848
UniProt
Find proteins for P27862 (Escherichia coli (strain K12)) Explore P27862 Go to UniProtKB: P27862
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P27862
Protein Feature View Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.332
R-Value Work: 0.261
Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 148.749	α = 90
b = 148.749	β = 90
c = 35.602	γ = 120

Software Package:

Software Name	Purpose
MOSFLM	data reduction
SCALA	data scaling
TRUNCATE	data reduction
REFMAC	refinement
CCP4	data scaling
TRUNCATE	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2003-12-30

Deposition Author(s):

Structural GenomiX

Revision History (Full details and data files)

Version 1.0: 2003-12-30
Type: Initial release
Version 1.1: 2008-04-26
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-10-04
Changes: Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.