1VI7 | pdb_00001vi7

Crystal structure of an hypothetical protein

PDB DOI: https://doi.org/10.2210/pdb1VI7/pdb

Classification: Structural genomics, unknown function
Organism(s): Escherichia coli
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2003-12-01 Released: 2003-12-30
Deposition Author(s): Structural GenomiX

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free:
0.332 (Depositor), 0.285 (DCC)
R-Value Work:
0.261 (Depositor), 0.241 (DCC)

wwPDB Validation 3D Report Full Report

Validation slider image for 1VI7

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of YIGZ, a conserved hypothetical protein from Escherichia coli k12 with a novel fold

Park, F., Gajiwala, K., Eroshkina, G., Furlong, E., He, D., Batiyenko, Y., Romero, R., Christopher, J., Badger, J., Hendle, J., Lin, J., Peat, T., Buchanan, S.

(2004) Proteins 55: 775-777

PubMed: 15103642 Search on PubMed
DOI: https://doi.org/10.1002/prot.20087
Primary Citation Related Structures:
1VI7

Organizational Affiliation

Structural GenomiX, Inc., San Diego, CA 92121, USA. frances_park@stromix.com

Macromolecule Content

Total Structure Weight: 23.27 kDa
Atom Count: 1,620
Modeled Residue Count: 206
Deposited Residue Count: 217
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein yigZ	A	217	Escherichia coli	Mutation(s): 0 Gene Names: YIGZ, B3848
UniProt
Find proteins for P27862 (Escherichia coli (strain K12)) Explore P27862 Go to UniProtKB: P27862
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P27862
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.332 (Depositor), 0.285 (DCC)
R-Value Work: 0.261 (Depositor), 0.241 (DCC)

Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 148.749	α = 90
b = 148.749	β = 90
c = 35.602	γ = 120

Software Package:

Software Name	Purpose
MOSFLM	data reduction
SCALA	data scaling
TRUNCATE	data reduction
REFMAC	refinement
CCP4	data scaling
TRUNCATE	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2003-12-30

Deposition Author(s):

Structural GenomiX

Revision History (Full details and data files)

Version 1.0: 2003-12-30
Type: Initial release
Version 1.1: 2008-04-26
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-10-04
Changes: Refinement description
Version 1.4: 2023-12-27
Changes: Data collection, Database references