Download MendeleyCrystal Structure of Bitter Gourd Trypsin Inhibitor
Suto, K., Furuichi, M., Nishimoto, E., Meno, K., Horii, K., Mizuno, H.To be published.
1VBW
Crystal Structure of Bitter Gourd Trypsin Inhibitor
- PDB DOI: https://doi.org/10.2210/pdb1VBW/pdb
- Classification: PROTEIN BINDING
- Organism(s): Momordica charantia
- Mutation(s): No
- Deposited: 2004-03-03 Released: 2005-03-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 0.93 Å
- R-Value Free: 0.143
- R-Value Work: 0.114
- R-Value Observed: 0.114
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| trypsin inhibitor BGIT | 68 | Momordica charantia | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q7M1Q1 (Momordica charantia) Explore Q7M1Q1 Go to UniProtKB: Q7M1Q1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7M1Q1 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| TLA Query on TLA | E [auth A] | L(+)-TARTARIC ACID C4 H6 O6 FEWJPZIEWOKRBE-JCYAYHJZSA-N |  | Ligand Interaction | |
| K Query on K | B [auth A] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | Ligand Interaction | |
| NA Query on NA | C [auth A], D [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 0.93 Å
- R-Value Free: 0.143
- R-Value Work: 0.114
- R-Value Observed: 0.114
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 22.662 | α = 92.05 |
| b = 23.023 | β = 100.11 |
| c = 27.685 | γ = 101.8 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| SCALEPACK | data scaling |
| CNS | refinement |
| SHELXL-97 | refinement |
| HKL-2000 | data reduction |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2005-03-22 Deposition Author(s): Suto, K., Furuichi, M., Nishimoto, E., Meno, K., Horii, K., Mizuno, H.
Revision History (Full details and data files)
- Version 1.0: 2005-03-22
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance
