1SVD

The structure of Halothiobacillus neapolitanus RuBisCo


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.166 
  • R-Value Work: 0.145 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The structure of Halothiobacillus neapolitanus RuBisCo

Kerfeld, C.A.Sawaya, M.R.Pashkov, I.Cannon, G.Williams, E.Tran, K.Yeates, T.O.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
A
473Halothiobacillus neapolitanus (strain ATCC 23641 / c2)Gene Names: cbbL
EC: 4.1.1.39
Find proteins for O85040 (Halothiobacillus neapolitanus (strain ATCC 23641 / c2))
Go to UniProtKB:  O85040
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Ribulose bisphosphate carboxylase small chain
M
110Halothiobacillus neapolitanus (strain ATCC 23641 / c2)Gene Names: cbbS (rbcS)
EC: 4.1.1.39
Find proteins for P45686 (Halothiobacillus neapolitanus (strain ATCC 23641 / c2))
Go to UniProtKB:  P45686
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
M
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.166 
  • R-Value Work: 0.145 
  • Space Group: I 4 2 2
Unit Cell:
Length (Å)Angle (°)
a = 157.066α = 90.00
b = 157.066β = 90.00
c = 107.609γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
MLPHAREphasing
SCALEPACKdata scaling
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2005-04-12
    Type: Initial release
  • Version 1.1: 2008-04-30
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Advisory, Version format compliance