Download MendeleyThe structure of Halothiobacillus neapolitanus RuBisCo
Kerfeld, C.A., Sawaya, M.R., Pashkov, I., Cannon, G., Williams, E., Tran, K., Yeates, T.O.To be published.
1SVD
The structure of Halothiobacillus neapolitanus RuBisCo
- PDB DOI: https://doi.org/10.2210/pdb1SVD/pdb
- Classification: LYASE
- Organism(s): Halothiobacillus neapolitanus
- Mutation(s): No
- Deposited: 2004-03-29 Released: 2005-04-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.166
- R-Value Work: 0.145
- R-Value Observed: 0.146
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit | A | 473 | Halothiobacillus neapolitanus | Mutation(s): 0 EC: 4.1.1.39 |  |
UniProt | |||||
Find proteins for O85040 (Halothiobacillus neapolitanus (strain ATCC 23641 / c2)) Explore O85040 Go to UniProtKB: O85040 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O85040 | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribulose bisphosphate carboxylase small chain | B [auth M] | 110 | Halothiobacillus neapolitanus | Mutation(s): 0 EC: 4.1.1.39 |  |
UniProt | |||||
Find proteins for P45686 (Halothiobacillus neapolitanus (strain ATCC 23641 / c2)) Explore P45686 Go to UniProtKB: P45686 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P45686 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], D [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| GOL Query on GOL | E [auth M] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.166
- R-Value Work: 0.145
- R-Value Observed: 0.146
- Space Group: I 4 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 157.066 | α = 90 |
| b = 157.066 | β = 90 |
| c = 107.609 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| MLPHARE | phasing |
Entry History
Deposition Data
- Released Date: 2005-04-12 Deposition Author(s): Kerfeld, C.A., Sawaya, M.R., Pashkov, I., Cannon, G., Williams, E., Tran, K., Yeates, T.O.
Revision History (Full details and data files)
- Version 1.0: 2005-04-12
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance
