Download MendeleyCrystal structure of KDO8P synthase in its binary complex with substrate analog Z-FPEP
Vainer, R., Adir, N., Baasov, T., Belakhov, V., Rabkin, E.To be published.
1PL9
Crystal structure of KDO8P synthase in its binary complex with substrate analog Z-FPEP
- PDB DOI: 10.2210/pdb1PL9/pdb
- Classification: TRANSFERASE
- Organism(s): Escherichia coli
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2003-06-08 Released: 2004-07-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.327
- R-Value Work: 0.233
- R-Value Observed: 0.280
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 2-dehydro-3-deoxyphosphooctonate aldolase | A | 284 | Escherichia coli | Mutation(s): 0 Gene Names: kdsA EC: 2.5.1.55 |  |
UniProt | |||||
Find proteins for P0A715 (Escherichia coli (strain K12)) Explore P0A715 Go to UniProtKB: P0A715 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0A715 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FPE Query on FPE | B [auth A] | 3-FLUORO-2-(PHOSPHONOOXY)PROPANOIC ACID C3 H6 F O6 P BNOCDEBUFVJMQI-REOHCLBHSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.327
- R-Value Work: 0.233
- R-Value Observed: 0.280
- Space Group: I 2 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 117.055 | α = 90 |
| b = 117.055 | β = 90 |
| c = 117.055 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| CNS | refinement |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2004-07-13 Deposition Author(s): Vainer, R., Adir, N., Baasov, T., Belakhov, V., Rabkin, E.
Revision History (Full details and data files)
- Version 1.0: 2004-07-13
Type: Initial release - Version 1.1: 2008-04-29
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance
