1PL9

Crystal structure of KDO8P synthase in its binary complex with substrate analog Z-FPEP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.327 
  • R-Value Work: 0.233 
  • R-Value Observed: 0.280 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Crystal structure of KDO8P synthase in its binary complex with substrate analog Z-FPEP

Vainer, R.Adir, N.Baasov, T.Belakhov, V.Rabkin, E.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
2-dehydro-3-deoxyphosphooctonate aldolaseA284Escherichia coliMutation(s): 0 
Gene Names: kdsA
EC: 2.5.1.55
UniProt
Find proteins for P0A715 (Escherichia coli (strain K12))
Explore P0A715 
Go to UniProtKB:  P0A715
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FPE (Subject of Investigation/LOI)
Query on FPE

Download Ideal Coordinates CCD File 
B [auth A]3-FLUORO-2-(PHOSPHONOOXY)PROPANOIC ACID
C3 H6 F O6 P
BNOCDEBUFVJMQI-REOHCLBHSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.327 
  • R-Value Work: 0.233 
  • R-Value Observed: 0.280 
  • Space Group: I 2 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 117.055α = 90
b = 117.055β = 90
c = 117.055γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
CNSrefinement
CNSphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment  



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-07-13
    Type: Initial release
  • Version 1.1: 2008-04-29
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance