1PL9

Crystal structure of KDO8P synthase in its binary complex with substrate analog Z-FPEP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.327 
  • R-Value Work: 0.233 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of KDO8P synthase in its binary complex with substrate analog Z-FPEP

Vainer, R.Adir, N.Baasov, T.Belakhov, V.Rabkin, E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
2-dehydro-3-deoxyphosphooctonate aldolase
A
284Escherichia coli (strain K12)Gene Names: kdsA
EC: 2.5.1.55
Find proteins for P0A715 (Escherichia coli (strain K12))
Go to UniProtKB:  P0A715
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FPE
Query on FPE

Download SDF File 
Download CCD File 
A
3-FLUORO-2-(PHOSPHONOOXY)PROPANOIC ACID
C3 H6 F O6 P
BNOCDEBUFVJMQI-REOHCLBHSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.327 
  • R-Value Work: 0.233 
  • Space Group: I 2 3
Unit Cell:
Length (Å)Angle (°)
a = 117.055α = 90.00
b = 117.055β = 90.00
c = 117.055γ = 90.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
DENZOdata reduction
CNSphasing
CNSrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2004-07-13
    Type: Initial release
  • Version 1.1: 2008-04-29
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Derived calculations, Version format compliance