Download Mendeley
Download EndnoteThe 2.5A crystal structure of protein YJGH from E. Coli
Zhang, R., Joachimiak, A., Edwards, A., Savchenko, A., Xu, L.To be published.
1PF5
Structural Genomics, Protein YJGH
- DOI: 10.2210/pdb1PF5/pdb
- Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION
- Organism(s): Escherichia coli (strain K12)
- Expression System: Escherichia coli
- Deposited: 2003-05-23 Released: 2003-12-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.5 Å
- R-Value Free: 0.218
- R-Value Work: 0.196
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Hypothetical protein yjgH | A | 131 | Escherichia coli (strain K12) | Mutation(s): 0 Gene Names: yjgH |
Find proteins for P39332 (Escherichia coli (strain K12)) Go to UniProtKB: P39332 | ||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HG Query on HG | A | MERCURY (II) ION Hg BQPIGGFYSBELGY-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.5 Å
- R-Value Free: 0.218
- R-Value Work: 0.196
- Space Group: I 21 3
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 127.737 | α = 90.00 |
| b = 127.737 | β = 90.00 |
| c = 127.737 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| CNS | phasing |
| d*TREK | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Deposited Date: 2003-05-23
- Released Date: 2003-12-09
- Deposition Author(s): Zhang, R., Joachimiak, A., Edwards, A., Savchenko, A., Xu, L., Midwest Center for Structural Genomics (MCSG)
Revision History
- Version 1.0: 2003-12-09
Type: Initial release - Version 1.1: 2008-04-29
Type: Version format compliance - Version 1.2: 2011-07-13
Type: Derived calculations, Version format compliance - Version 1.3: 2017-10-11
Type: Refinement description
