1PF5

Structural Genomics, Protein YJGH


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.196 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

The 2.5A crystal structure of protein YJGH from E. Coli

Zhang, R.Joachimiak, A.Edwards, A.Savchenko, A.Xu, L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hypothetical protein yjgH
A
131Escherichia coli (strain K12)Gene Names: yjgH
Find proteins for P39332 (Escherichia coli (strain K12))
Go to UniProtKB:  P39332
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
HG
Query on HG

Download SDF File 
Download CCD File 
A
MERCURY (II) ION
Hg
BQPIGGFYSBELGY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.196 
  • Space Group: I 21 3
Unit Cell:
Length (Å)Angle (°)
a = 127.737α = 90.00
b = 127.737β = 90.00
c = 127.737γ = 90.00
Software Package:
Software NamePurpose
CNSrefinement
CNSphasing
d*TREKdata reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2003-12-09
    Type: Initial release
  • Version 1.1: 2008-04-29
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Derived calculations, Version format compliance
  • Version 1.3: 2017-10-11
    Type: Refinement description