Biological Assembly 1  

 3D View: Structure | 1D-3D View | Electron Density | Validation Report

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Homo 3-mer - A3 

Local Symmetry: Cyclic - C2  (3D View)
Local Stoichiometry: Homo 2-mer - A2 Local Symmetry: Cyclic - C2  (3D View)
Local Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 57.82 kDa 
• Atom Count: 3520 
• Modelled Residue Count: 448 
• Deposited Residue Count: 522 
• Unique protein chains: 2

1OW7

Paxillin LD4 motif bound to the Focal Adhesion Targeting (FAT) domain of the Focal Adhesion Kinase

• PDB DOI: 10.2210/pdb1OW7/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2003-03-28 Released: 2003-10-21 
• Deposition Author(s): Hoellerer, M.K., Noble, M.E.M., Labesse, G., Werner, J.M., Arold, S.T.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 0.269 
• R-Value Work: 0.237 
• R-Value Observed: 0.239 

Literature

Molecular Recognition of Paxillin LD Motifs by the Focal Adhesion Targeting Domain

Hoellerer, M.K., Noble, M.E.M., Labesse, G., Werner, J.M., Arold, S.T.

(2003) Structure 11: 1207-1217

• PubMed: 14527389 
• DOI: 10.1016/j.str.2003.08.010
• Primary Citation of Related Structures:  
  1OW6, 1OW7, 1OW8


• PubMed Abstract: 
  

Focal adhesions (FAs) are large submembrane signaling complexes formed at sites of cellular attachment to the extracellular matrix. The interaction of LD motifs with their targets plays an important role in the assembly of FAs. We have determined the molecular basis for the recognition of two paxillin LD motifs by the FA targeting (FAT) domain of FA kinase using a combination of X-ray crystallography, solution NMR, and homology modeling. The four-helix FAT domain displays two LD binding sites on opposite sites of the molecule that bind LD peptides in a helical conformation. Threading studies suggest that the LD-interacting domain of p95PKL shares a common four-helical core with the FAT domain and the tail of vinculin, defining a structural family of LD motif binding modules.

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Organizational Affiliation: 

Biochemistry Department, South Parks Road, Oxford, OX1 3QU, United Kingdom.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Focal adhesion kinase 1	A, B, C	161	Homo sapiens	Mutation(s): 0  Gene Names: PTK2 OR FAK1 OR FAK, PTK2, FAK, FAK1 EC: 2.7.1.112 (PDB Primary Data), 2.7.10.2 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q05397 (Homo sapiens) Explore Q05397  Go to UniProtKB:  Q05397
PHAROS:  Q05397 GTEx:  ENSG00000169398

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Paxillin	D, E, F	13	N/A	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P49023 (Homo sapiens) Explore P49023  Go to UniProtKB:  P49023
PHAROS:  P49023 GTEx:  ENSG00000089159

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 0.269 
• R-Value Work: 0.237 
• R-Value Observed: 0.239 
• Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 88.994	α = 90
b = 219.665	β = 90
c = 96.199	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
CCP4	data scaling
AMoRE	phasing

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2003-03-28 
• Released Date: 2003-10-21 
Deposition Author(s): Hoellerer, M.K., Noble, M.E.M., Labesse, G., Werner, J.M., Arold, S.T.

Revision History  

• Version 1.0: 2003-10-21
  Type: Initial release
  
• Version 1.1: 2008-04-29
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance