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Paxillin LD4 motif bound to the Focal Adhesion Targeting (FAT) domain of the Focal Adhesion Kinase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1K05 pdbentry 1K05
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.3 292 sodium chloride, glycerol, Hepes, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 4.77 74.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.994 α = 90 b = 219.665 β = 90 c = 96.199 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH two crystals monochromator between two cylindrical parabolic mirrors 2002-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.98 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 29.6 88.7 0.079 0.064 8.9 2.7 23071 23071 76
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.69 79.3 0.86 0.62 0.3 1.7 1210
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdbentry 1K05 2.6 111.8 23071 23071 1189 78.15 0.2387 0.23871 0.23705 0.2364 0.26947 0.2747 RANDOM 74.702
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 7.65 -3.19 -4.46
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 7.598 r_mcangle_it 5.037 r_scbond_it 4.743 r_angle_other_deg 3.48 r_mcbond_it 2.828 r_angle_refined_deg 1.713 r_dihedral_angle_1_deg 1.43 r_symmetry_vdw_other 0.309 r_nbd_other 0.294 r_symmetry_vdw_refined 0.278
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 7.598 r_mcangle_it 5.037 r_scbond_it 4.743 r_angle_other_deg 3.48 r_mcbond_it 2.828 r_angle_refined_deg 1.713 r_dihedral_angle_1_deg 1.43 r_symmetry_vdw_other 0.309 r_nbd_other 0.294 r_symmetry_vdw_refined 0.278 r_nbd_refined 0.251 r_xyhbond_nbd_refined 0.174 r_symmetry_hbond_refined 0.142 r_chiral_restr 0.112 r_nbtor_other 0.107 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_gen_planes_other 0.005 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3470 Nucleic Acid Atoms Solvent Atoms 50 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing