1OQC | pdb_00001oqc

The crystal structure of augmenter of liver regeneration: a mammalian FAD dependent sulfhydryl oxidase

PDB DOI: https://doi.org/10.2210/pdb1OQC/pdb

Classification: OXIDOREDUCTASE
Organism(s): Rattus norvegicus
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2003-03-07 Released: 2003-04-15
Deposition Author(s): Rose, J.P., Wu, C.-K., Wang, B.-C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free:
0.240 (Depositor)
R-Value Work:
0.202 (Depositor), 0.203 (DCC)
R-Value Observed:
0.202 (Depositor)

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Ligand Structure Quality Assessment

This is version 1.3 of the entry. See complete history.

Literature

The refined crystal structure of augmenter of liver regeneration

Wu, C.-K., Dailey, T.A., Dailey, H.A., Wang, B.-C., Rose, J.P.

(1999) Int Union Cryst (meeting) 1: 293-293

DOI: https://doi.org/10.1109/ACC.1999.782787

Macromolecule Content

Total Structure Weight: 63.56 kDa
Atom Count: 4,563
Modeled Residue Count: 447
Deposited Residue Count: 500
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
augmenter of liver regeneration	A, B, C, D	125	Rattus norvegicus	Mutation(s): 0 Gene Names: ALR EC: 1.8.3.2
UniProt
Find proteins for Q63042 (Rattus norvegicus) Explore Q63042 Go to UniProtKB: Q63042
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q63042
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FAD Query on FAD Download:Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain F [auth B] SDF format, chain G [auth C] SDF format, chain H [auth D] MOL2 format, chain E [auth A] MOL2 format, chain F [auth B] MOL2 format, chain G [auth C] MOL2 format, chain H [auth D] mmCIF format, chain E [auth A] mmCIF format, chain F [auth B] mmCIF format, chain G [auth C] mmCIF format, chain H [auth D]	E [auth A], F [auth B], G [auth C], H [auth D]	FLAVIN-ADENINE DINUCLEOTIDE C₂₇ H₃₃ N₉ O₁₅ P₂ VWWQXMAJTJZDQX-UYBVJOGSSA-N		Interactions Focus chain E [auth A] Focus chain F [auth B] Focus chain G [auth C] Focus chain H [auth D] Interactions & Density Focus chain E [auth A] Focus chain F [auth B] Focus chain G [auth C] Focus chain H [auth D]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.240 (Depositor)
R-Value Work: 0.202 (Depositor), 0.203 (DCC)
R-Value Observed: 0.202 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 106.987	α = 90
b = 123.13	β = 90
c = 37.93	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
DENZO	data reduction
SAINT	data reduction
SCALEPACK	data scaling
SAINT	data scaling
SOLVE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2003-04-15

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2003-04-15
Type: Initial release
Version 1.1: 2007-10-16
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance
Version 1.3: 2024-10-30
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.