1OPO

THE STRUCTURE OF CARNATION MOTTLE VIRUS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Observed: 0.183 

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This is version 1.3 of the entry. See complete history


Literature

The atomic structure of Carnation Mottle Virus capsid protein

Morgunova, E.Dauter, Z.Fry, E.Stuart, D.Stel'mashchuk, V.Mikhailov, A.M.Wilson, K.S.Vainshtein, B.K.

(1994) FEBS Lett 338: 267-271

  • DOI: https://doi.org/10.1016/0014-5793(94)80281-5
  • Primary Citation of Related Structures:  
    1OPO

  • PubMed Abstract: 

    The structure of the Carnation Mottle Virus (CMtV) capsid protein has been determined at 3.2 A resolution by the method of molecular replacement. Three-dimensional data were collected from a small number of crystals (sp.g. I23, a = 382.6 A) using the synchrotron radiation with an image plate as detector. The coordinates of Tomato Bushy Stunt Virus (TBSV) were used as a searching model. Refinement of the coordinates of 7,479 non-hydrogen atoms performed by the program XPLOR, has led to an R-factor of 18.3%. It was found that the amino acid chain fold of capsid protein is very similar to that in other icosahedral viruses. However, there are some differences in the contact regions between protein subunits and also the lack of the beta-annulus around the 3-fold icosahedral axes. The structural and biochemical results lead us to consider an alternative assembly pathway.


  • Organizational Affiliation

    Institute of Crystallography, Russian Academy of Sciences, Moscow.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Coat protein
A, B, C
348Carnation mottle virusMutation(s): 0 
UniProt
Find proteins for P04383 (Carnation mottle virus)
Explore P04383 
Go to UniProtKB:  P04383
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP04383
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Observed: 0.183 
  • Space Group: I 2 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 382.6α = 90
b = 382.6β = 90
c = 382.6γ = 90
Software Package:
Software NamePurpose
SCALEPACKdata scaling
GAPmodel building
X-PLORrefinement
GAPphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2003-04-01
    Type: Initial release
  • Version 1.1: 2008-04-29
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2023-08-16
    Changes: Data collection, Database references, Derived calculations, Refinement description