1OGP

The crystal structure of plant sulfite oxidase provides insight into sulfite oxidation in plants and animals

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.235 
  • R-Value Observed: 0.237 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history. 


Literature

The Crystal Structure of Plant Sulfite Oxidase Provides Insights Into Sulfite Oxidation in Plants and Animals

Schrader, N., Fischer, K., Theis, K., Mendel, R.R., Schwarz, G., Kisker, C.

(2003) Structure 11: 1251

  • DOI: 10.1016/j.str.2003.09.001
  • Primary Citation of Related Structures:  
    1OGP

  • PubMed Abstract: 

    • The molybdenum cofactor (Moco) containing sulfite oxidase (SO) from Arabidopsis thaliana has recently been identified and biochemically characterized. The enzyme is found in peroxisomes and believed to detoxify excess sulfite that is produced during sulfur assimilation, or due to air pollution ...

    The molybdenum cofactor (Moco) containing sulfite oxidase (SO) from Arabidopsis thaliana has recently been identified and biochemically characterized. The enzyme is found in peroxisomes and believed to detoxify excess sulfite that is produced during sulfur assimilation, or due to air pollution. Plant SO (PSO) is homodimeric and homologous to animal SO, but contains only a single Moco domain without an additional redox center. Here, we present the first crystal structure of a plant Moco enzyme, the apo-state of Arabidopsis SO at 2.6 A resolution. The overall fold and coordination of the Moco are similar to chicken SO (CSO). Comparisons of conserved surface residues and the charge distribution in PSO and CSO reveal major differences near the entrance to both active sites reflecting different electron acceptors. Arg374 has been identified as an important substrate binding residue due to its conformational change when compared to the sulfate bound structure of CSO.

    Organizational Affiliation: 

    Department of Pharmacological Sciences, Center for Structural Biology, State University of New York at Stony Brook, Stony Brook, NY 11794, USA.



Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
SULFITE OXIDASE
A, B, C, D, E, F
A, B, C, D, E, F
393Arabidopsis thalianaMutation(s): 0 
Gene Names: SOX, MCP, At3g01910, F1C9.31, F28J7.38
EC: 1.8.3.1
UniProt
Find proteins for Q9S850 (Arabidopsis thaliana)
Explore Q9S850 
Go to UniProtKB:  Q9S850
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9S850
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MTQ
Query on MTQ
Download Ideal Coordinates CCD File 
DA [auth F],
J [auth A],
N [auth B],
R [auth C],
V [auth D],
DA [auth F],
J [auth A],
N [auth B],
R [auth C],
V [auth D],
Z [auth E]
(MOLYBDOPTERIN-S,S)-DIOXO-THIO-MOLYBDENUM(VI)
C10 H8 Mo N5 O8 P S2
IXNYCVJPVGNGQC-NRYJBHHQSA-L		 Ligand Interaction
CS
Query on CS
Download Ideal Coordinates CCD File 
AA [auth F],
BA [auth F],
G [auth A],
H [auth A],
K [auth B],
AA [auth F],
BA [auth F],
G [auth A],
H [auth A],
K [auth B],
L [auth B],
O [auth C],
P [auth C],
S [auth D],
T [auth D],
W [auth E],
X [auth E]
CESIUM ION
Cs
NCMHKCKGHRPLCM-UHFFFAOYSA-N		 Ligand Interaction
GOL
Query on GOL
Download Ideal Coordinates CCD File 
CA [auth F],
I [auth A],
M [auth B],
Q [auth C],
U [auth D],
CA [auth F],
I [auth A],
M [auth B],
Q [auth C],
U [auth D],
Y [auth E]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N		 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.235 
  • R-Value Observed: 0.237 
  • Space Group: C 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 222.918α = 90
b = 351.271β = 90
c = 158.282γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
BEASTphasing
REFMACrefinement

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


View more in-depth experimental data

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2003-10-09
    Type: Initial release
  • Version 1.1: 2011-05-08
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance