1OGP | pdb_00001ogp

The crystal structure of plant sulfite oxidase provides insight into sulfite oxidation in plants and animals

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d1ogpf1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	Molybdenum-containing oxidoreductases-like dimerisation domain	Sulfite oxidase, C-terminal domain	MOUSE-EAR CRESS (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
F	d1ogpf2	Alpha and beta proteins (a+b)	Oxidoreductase molybdopterin-binding domain	Oxidoreductase molybdopterin-binding domain	Oxidoreductase molybdopterin-binding domain	Sulfite oxidase, middle catalytic domain	MOUSE-EAR CRESS (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
E	d1ogpe1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	Molybdenum-containing oxidoreductases-like dimerisation domain	Sulfite oxidase, C-terminal domain	MOUSE-EAR CRESS (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
E	d1ogpe2	Alpha and beta proteins (a+b)	Oxidoreductase molybdopterin-binding domain	Oxidoreductase molybdopterin-binding domain	Oxidoreductase molybdopterin-binding domain	Sulfite oxidase, middle catalytic domain	MOUSE-EAR CRESS (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
D	d1ogpd1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	Molybdenum-containing oxidoreductases-like dimerisation domain	Sulfite oxidase, C-terminal domain	MOUSE-EAR CRESS (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
D	d1ogpd2	Alpha and beta proteins (a+b)	Oxidoreductase molybdopterin-binding domain	Oxidoreductase molybdopterin-binding domain	Oxidoreductase molybdopterin-binding domain	Sulfite oxidase, middle catalytic domain	MOUSE-EAR CRESS (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
C	d1ogpc1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	Molybdenum-containing oxidoreductases-like dimerisation domain	Sulfite oxidase, C-terminal domain	MOUSE-EAR CRESS (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
C	d1ogpc2	Alpha and beta proteins (a+b)	Oxidoreductase molybdopterin-binding domain	Oxidoreductase molybdopterin-binding domain	Oxidoreductase molybdopterin-binding domain	Sulfite oxidase, middle catalytic domain	MOUSE-EAR CRESS (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
B	d1ogpb1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	Molybdenum-containing oxidoreductases-like dimerisation domain	Sulfite oxidase, C-terminal domain	MOUSE-EAR CRESS (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
B	d1ogpb2	Alpha and beta proteins (a+b)	Oxidoreductase molybdopterin-binding domain	Oxidoreductase molybdopterin-binding domain	Oxidoreductase molybdopterin-binding domain	Sulfite oxidase, middle catalytic domain	MOUSE-EAR CRESS (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
A	d1ogpa1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	Molybdenum-containing oxidoreductases-like dimerisation domain	Sulfite oxidase, C-terminal domain	MOUSE-EAR CRESS (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
A	d1ogpa2	Alpha and beta proteins (a+b)	Oxidoreductase molybdopterin-binding domain	Oxidoreductase molybdopterin-binding domain	Oxidoreductase molybdopterin-binding domain	Sulfite oxidase, middle catalytic domain	MOUSE-EAR CRESS (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Oxidoreductase molybdopterin-binding domain	8037482	3001433	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	E set domains	8055005	3000070	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	E set domains	8055005	3000070	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Oxidoreductase molybdopterin-binding domain	8037482	3001433	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Oxidoreductase molybdopterin-binding domain	8037482	3001433	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	E set domains	8055005	3000070	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	E set domains	8055005	3000070	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Oxidoreductase molybdopterin-binding domain	8037482	3001433	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Oxidoreductase molybdopterin-binding domain	8037482	3001433	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	E set domains	8055005	3000070	SCOP2B (2022-06-29)
A	SCOP2 Family	Oxidoreductase molybdopterin-binding domain	8025103	4002574	SCOP2 (2022-06-29)
A	SCOP2 Family	Molybdenum-containing oxidoreductases-like dimerisation domain	8055004	4007515	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Oxidoreductase molybdopterin-binding domain	8037482	3001433	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	E set domains	8055005	3000070	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Mo-co_dimer	e1ogpF1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Mo-co_dimer	ECOD (1.6)
F	Oxidored_molyb	e1ogpF2	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Sulfite oxidase, middle catalytic domain	F: Oxidored_molyb	ECOD (1.6)
E	Mo-co_dimer	e1ogpE1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Mo-co_dimer	ECOD (1.6)
E	Oxidored_molyb	e1ogpE2	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Sulfite oxidase, middle catalytic domain	F: Oxidored_molyb	ECOD (1.6)
D	Mo-co_dimer	e1ogpD1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Mo-co_dimer	ECOD (1.6)
D	Oxidored_molyb	e1ogpD2	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Sulfite oxidase, middle catalytic domain	F: Oxidored_molyb	ECOD (1.6)
C	Mo-co_dimer	e1ogpC1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Mo-co_dimer	ECOD (1.6)
C	Oxidored_molyb	e1ogpC2	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Sulfite oxidase, middle catalytic domain	F: Oxidored_molyb	ECOD (1.6)
B	Mo-co_dimer	e1ogpB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Mo-co_dimer	ECOD (1.6)
B	Oxidored_molyb	e1ogpB2	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Sulfite oxidase, middle catalytic domain	F: Oxidored_molyb	ECOD (1.6)
A	Mo-co_dimer	e1ogpA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Mo-co_dimer	ECOD (1.6)
A	Oxidored_molyb	e1ogpA2	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Sulfite oxidase, middle catalytic domain	F: Oxidored_molyb	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.90.420.10	Alpha Beta	Alpha-Beta Complex	Sulfite Oxidase	Chain A, domain 2	CATH (4.3.0)
F	2.60.40.650	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
E	3.90.420.10	Alpha Beta	Alpha-Beta Complex	Sulfite Oxidase	Chain A, domain 2	CATH (4.3.0)
E	2.60.40.650	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
D	3.90.420.10	Alpha Beta	Alpha-Beta Complex	Sulfite Oxidase	Chain A, domain 2	CATH (4.3.0)
D	2.60.40.650	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
C	3.90.420.10	Alpha Beta	Alpha-Beta Complex	Sulfite Oxidase	Chain A, domain 2	CATH (4.3.0)
C	2.60.40.650	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
B	3.90.420.10	Alpha Beta	Alpha-Beta Complex	Sulfite Oxidase	Chain A, domain 2	CATH (4.3.0)
B	2.60.40.650	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
A	3.90.420.10	Alpha Beta	Alpha-Beta Complex	Sulfite Oxidase	Chain A, domain 2	CATH (4.3.0)
A	2.60.40.650	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF00174	Oxidoreductase molybdopterin binding domain (Oxidored_molyb)	Oxidoreductase molybdopterin binding domain	This domain is found in a variety of oxidoreductases. This domain binds to a molybdopterin cofactor. Xanthine dehydrogenases, that also bind molybdopterin, have essentially no similarity.	Domain
A, B, C, D, E A, B, C, D, E, F	PF03404	Mo-co oxidoreductase dimerisation domain (Mo-co_dimer)	Mo-co oxidoreductase dimerisation domain	This domain is found in molybdopterin cofactor (Mo-co) oxidoreductases. It is involved in dimer formation, and has an Ig-fold structure [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	SULFITE OXIDASE	cation binding transition metal ion binding molybdenum ion binding ion binding binding metal ion binding small molecule binding oxidoreductase activity, acting on a sulfur group of donors oxidoreductase activity sulfite oxidase activity oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor catalytic activity	tetrapyrrole metabolic process chlorophyll metabolic process metabolic process cellular process porphyrin-containing compound metabolic process response to stimulus response to chemical response to sulfur dioxide response to oxygen-containing compound sulfur compound metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle peroxisome microbody cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR005066	Moybdenum cofactor oxidoreductase, dimerisation	Domain
A, B, C, D, E A, B, C, D, E, F	IPR008335	Eukaryotic molybdopterin oxidoreductase	Family
A, B, C, D, E A, B, C, D, E, F	IPR036374	Oxidoreductase, molybdopterin-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR000572	Oxidoreductase, molybdopterin-binding domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR014756	Immunoglobulin E-set	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.