1NTO

N249Y MUTANT OF ALCOHOL DEHYDROGENASE FROM THE ARCHAEON SULFOLOBUS SOLFATARICUS-MONOCLINIC CRYSTAL FORM


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.210 
  • R-Value Observed: 0.211 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structural study of a single-point mutant of Sulfolobus solfataricus alcohol dehydrogenase with enhanced activity.

Esposito, L.Bruno, I.Sica, F.Raia, C.A.Giordano, A.Rossi, M.Mazzarella, L.Zagari, A.

(2003) FEBS Lett 539: 14-18

  • DOI: 10.1016/s0014-5793(03)00173-x
  • Primary Citation of Related Structures:  
    1NTO, 1NVG

  • PubMed Abstract: 
  • Alcohol dehydrogenase from Sulfolobus solfataricus (SsADH) is the only enzyme from Archaea among the structurally studied members of the medium-chain ADH family described so far. Here, we present the three-dimensional structure of the apo form of the mutant N249Y which exhibits increased catalytic activity when compared to the wild-type enzyme ...

    Alcohol dehydrogenase from Sulfolobus solfataricus (SsADH) is the only enzyme from Archaea among the structurally studied members of the medium-chain ADH family described so far. Here, we present the three-dimensional structure of the apo form of the mutant N249Y which exhibits increased catalytic activity when compared to the wild-type enzyme. The substitution, located in the coenzyme binding domain, decreases the affinity for NAD(H) cofactor. The rearrangement of segments 248-250 and 270-275, induced by the mutation, suggests an explanation for the lower coenzyme affinity. This study also highlights the role in SsADH catalysis of the flexible loops located at the interface between the catalytic and the coenzyme domains.


    Related Citations: 
    • Asn249tyr substitution at the coenzyme binding domain activates Sulfolobus solfataricus alcohol dehydrogenase and increases its thermal stability
      Giordano, A., Cannio, R., La Cara, F., Bartolucci, S., Rossi, M., Raia, C.A.
      (1999) Biochemistry 38: 3043
    • Crystal structure of alcohol dehydrogenase from the hyperthermophilic archaeon Sulfolobus solfataricus at 1.85 angstrom resolution
      Esposito, L., Sica, F., Raia, C.A., Giordano, A., Rossi, M., Mazzarella, L., Zagari, A.
      (2002) J Mol Biol 318: 463
    • Three Dimensional Structure of Horse Liver Alcoholdehydrogenase at 2.4 Angstrom Resolution
      Eklund, H., Nordstrom, B., Zeppezauer, E., Soderlund, G., Ohlsson, I., Boiwe, T., Soderberg, B.O., Tapia, O., Branden, C.I., Akeson, A.
      (1976) J Mol Biol 102: 27

    Organizational Affiliation

    Istituto di Biostrutture e Bioimmagini, CNR, via Mezzocannone 6-8, I-80134 Naples, Italy.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
NAD-dependent alcohol dehydrogenase
A,
B,
C,
D,
E,
A,
B,
C,
D,
E,
F [auth H]
347Saccharolobus solfataricusMutation(s): 1 
Gene Names: adh
EC: 1.1.1.1
UniProt
Find proteins for P39462 (Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
Explore P39462 
Go to UniProtKB:  P39462
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP39462
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.210 
  • R-Value Observed: 0.211 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 215.327α = 90
b = 91.594β = 99.2
c = 118.238γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing
CNSrefinement

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2003-08-26
    Type: Initial release
  • Version 1.1: 2008-04-29
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2021-10-27
    Changes: Database references, Derived calculations