1NLX

Crystal Structure of PHL P 6, A Major Timothy Grass Pollen Allergen Co-Crystallized with Zinc


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.272 
  • R-Value Work: 0.243 
  • R-Value Observed: 0.248 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Crystal Structure oh Phl p 6, a major timothy grass pollen allergen co-crystallized with Zinc

Fedorov, A.A.Ball, T.Fedorov, E.V.Vrtala, S.Valenta, R.Almo, S.C.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Pollen allergen Phl p 6
A, B, C, D, E, F, G, H, I, J, K, L, M, N
A, B, C, D, E, F, G, H, I, J, K, L, M, N
111Phleum pratenseMutation(s): 0 
Gene Names: PHLPVI
UniProt
Find proteins for P43215 (Phleum pratense)
Explore P43215 
Go to UniProtKB:  P43215
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP43215
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ARS
Query on ARS

Download Ideal Coordinates CCD File 
JA [auth I],
OA [auth K],
RA [auth L],
S [auth B],
V [auth C],
JA [auth I],
OA [auth K],
RA [auth L],
S [auth B],
V [auth C],
WA [auth N],
Y [auth D]
ARSENIC
As
RBFQJDQYXXHULB-UHFFFAOYSA-N
 Ligand Interaction
ZN
Query on ZN

Download Ideal Coordinates CCD File 
AA [auth E],
BA [auth F],
CA [auth F],
DA [auth G],
EA [auth G],
AA [auth E],
BA [auth F],
CA [auth F],
DA [auth G],
EA [auth G],
FA [auth H],
GA [auth H],
HA [auth I],
IA [auth I],
KA [auth J],
LA [auth J],
MA [auth K],
NA [auth K],
O [auth A],
P [auth A],
PA [auth L],
Q [auth B],
QA [auth L],
R [auth B],
SA [auth M],
T [auth C],
TA [auth M],
U [auth C],
UA [auth N],
VA [auth N],
W [auth D],
X [auth D],
Z [auth E]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.272 
  • R-Value Work: 0.243 
  • R-Value Observed: 0.248 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 110.809α = 90
b = 110.335β = 90
c = 159.42γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing
CNSrefinement

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2003-01-21
    Type: Initial release
  • Version 1.1: 2008-04-29
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance
  • Version 1.3: 2021-02-03
    Changes: Database references, Derived calculations, Structure summary