Macromolecule Content

Total Structure Weight: 67.72 kDa
Atom Count: 4,814
Modelled Residue Count: 536
Deposited Residue Count: 586
Unique protein chains: 1

1MRZ

Crystal structure of a flavin binding protein from Thermotoga Maritima, TM379

PDB DOI: https://doi.org/10.2210/pdb1MRZ/pdb

Classification: TRANSFERASE
Organism(s): Thermotoga maritima
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2002-09-19 Released: 2003-09-23
Deposition Author(s): Wang, W., Kim, R., Jancarik, J., Yokota, H., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.233
R-Value Work: 0.217
R-Value Observed: 0.217

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of a flavin-binding protein from Thermotoga Maritima

Wang, W., Kim, R., Jancarik, J., Yokota, H., Kim, S.-H.

(2003) Proteins 52: 633-635

PubMed: 12910462 Search on PubMed
DOI: https://doi.org/10.1002/prot.10353
Primary Citation of Related Structures:
1MRZ

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Riboflavin kinase/FMN adenylyltransferase	A, B	293	Thermotoga maritima	Mutation(s): 0 Gene Names: TM379 EC: 2.7.1.26 (UniProt), 2.7.7.2 (UniProt)
UniProt
Find proteins for Q9WZW1 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9WZW1 Go to UniProtKB: Q9WZW1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9WZW1
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CIT Query on CIT Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth B]	C [auth A], D [auth B]	CITRIC ACID C₆ H₈ O₇ KRKNYBCHXYNGOX-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.233
R-Value Work: 0.217
R-Value Observed: 0.217
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.211	α = 90
b = 83.095	β = 116.93
c = 67.851	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SCALEPACK	data scaling
CNS	refinement
DENZO	data reduction
CNS	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2003-09-23

Deposition Author(s):

Berkeley Structural Genomics Center (BSGC)

Revision History (Full details and data files)

Version 1.0: 2003-09-23
Type: Initial release
Version 1.1: 2008-04-28
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.3: 2019-07-24
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.