Download MendeleyStructural and thermodynamic analysis of the packing of two alpha-helices in bacteriophage T4 lysozyme.
Daopin, S., Alber, T., Baase, W.A., Wozniak, J.A., Matthews, B.W.(1991) J Mol Biol 221: 647-667
- PubMed: 1920439 Search on PubMed
- DOI: https://doi.org/10.1016/0022-2836(91)80079-a
- Primary Citation of Related Structures:
1L48, 1L49, 1L50, 1L51, 1L52, 1L53 - PubMed Abstract:
- The Structural and Thermodynamic Consequences of Burying a Charged Residue within the Hydrophobic Core of T4 Lysozyme
Daopin, S., Anderson, E., Baase, W., Dahlquist, F.W., Matthews, B.W.
() To be published --: -- - Multiple Stabilizing Alanine Replacements within Alpha-Helix 126-134 of T4 Lysozyme Have Independent, Additive Effects on Both Structure and Stability
Zhang, X.-J., Baase, W.A., Matthews, B.W.
() To be published --: -- - Tolerance of T4 Lysozyme to Proline Substitutions within the Long Interdomain Alpha-Helix Illustrates the Adaptability of Proteins to Potentially Destabilizing Lesions
Sauer, U.H., Dao-Pin, S., Matthews, B.W.
() To be published --: -- - Tolerance of T4 Lysozyme to Multiple Xaa (Right Arrow) Ala Substitutions: A Polyalanine Alpha-Helix Containing Ten Consecutive Alanines
Heinz, D.W., Baase, W.A., Matthews, B.W.
() To be published --: -- - Cumulative Site-Directed Charge-Change Replacements in Bacteriophage T4 Lysozyme Suggest that Long-Range Electrostatic Interactions Contribute Little to Protein Stability
Dao-Pin, S., Soderlind, E., Baase, W.A., Wozniak, J.A., Sauer, U., Matthews, B.W.
(1991) J Mol Biol 221: 873 - Analysis of the Interaction between Charged Side Chains and the Alpha-Helix Dipole Using Designed Thermostable Mutants of Phage T4 Lysozyme
Nicholson, H., Anderson, D.E., Dao-Pin, S., Matthews, B.W.
(1991) Biochemistry 30: 9816 - Contributions of Engineered Surface Salt Bridges to the Stability of T4 Lysozyme Determined by Directed Mutagenesis
Dao-Pin, S., Sauer, U., Nicholson, H., Matthews, B.W.
(1991) Biochemistry 30: 7142 - Toward a Simplification of the Protein Folding Problem: A Stabilizing Polyalanine Alpha-Helix Engineered in T4 Lysozyme
Zhang, X.-J., Baase, W.A., Matthews, B.W.
(1991) Biochemistry 30: 2012 - Structure of a Thermostable Disulfide-Bridge Mutant of Phage T4 Lysozyme Shows that an Engineered Crosslink in a Flexible Region Does not Increase the Rigidity of the Folded Protein
Pjura, P.E., Matsumura, M., Wozniak, J.A., Matthews, B.W.
(1990) Biochemistry 29: 2592 - Structural Studies of Mutants of T4 Lysozyme that Alter Hydrophobic Stabilization
Matsumura, M., Wozniak, J.A., Dao-Pin, S., Matthews, B.W.
(1989) J Biol Chem 264: 16059 - High-Resolution Structure of the Temperature-Sensitive Mutant of Phage Lysozyme, Arg 96 (Right Arrow) His
Weaver, L.H., Gray, T.M., Gruetter, M.G., Anderson, D.E., Wozniak, J.A., Dahlquist, F.W., Matthews, B.W.
(1989) Biochemistry 28: 3793 - Contributions of Left-Handed Helical Residues to the Structure and Stability of Bacteriophage T4 Lysozyme
Nicholson, H., Soderlind, E., Tronrud, D.E., Matthews, B.W.
(1989) J Mol Biol 210: 181 - Hydrophobic Stabilization in T4 Lysozyme Determined Directly by Multiple Substitutions of Ile 3
Matsumura, M., Becktel, W.J., Matthews, B.W.
(1988) Nature 334: 406 - Enhanced Protein Thermostability from Designed Mutations that Interact with Alpha-Helix Dipoles
Nicholson, H., Becktel, W.J., Matthews, B.W.
(1988) Nature 336: 651 - Replacements of Pro86 in Phage T4 Lysozyme Extend an Alpha-Helix But Do not Alter Protein Stability
Alber, T., Bell, J.A., Dao-Pin, S., Nicholson, H., Wozniak, J.A., Cook, S., Matthews, B.W.
(1988) Science 239: 631 - Enhanced Protein Thermostability from Site-Directed Mutations that Decrease the Entropy of Unfolding
Matthews, B.W., Nicholson, H., Becktel, W.J.
(1987) Proc Natl Acad Sci U S A 84: 6663 - Structural Analysis of the Temperature-Sensitive Mutant of Bacteriophage T4 Lysozyme, Glycine 156 (Right Arrow) Aspartic Acid
Gray, T.M., Matthews, B.W.
(1987) J Biol Chem 262: 16858 - Contributions of Hydrogen Bonds of Thr 157 to the Thermodynamic Stability of Phage T4 Lysozyme
Alber, T., Dao-Pin, S., Wilson, K., Wozniak, J.A., Cook, S.P., Matthews, B.W.
(1987) Nature 330: 41 - Structural Studies of Mutants of the Lysozyme of Bacteriophage T4. The Temperature-Sensitive Mutant Protein Thr157 (Right Arrow) Ile
Gruetter, M.G., Gray, T.M., Weaver, L.H., Alber, T., Wilson, K., Matthews, B.W.
(1987) J Mol Biol 197: 315 - Structure of Bacteriophage T4 Lysozyme Refined at 1.7 Angstroms Resolution
Weaver, L.H., Matthews, B.W.
(1987) J Mol Biol 193: 189 - Temperature-Sensitive Mutations of Bacteriophage T4 Lysozyme Occur at Sites with Low Mobility and Low Solvent Accessibility in the Folded Protein
Alber, T., Dao-Pin, S., Nye, J.A., Muchmore, D.C., Matthews, B.W.
(1987) Biochemistry 26: 3754 - Common Precursor of Lysozymes of Hen Egg-White and Bacteriophage T4
Matthews, B.W., Gruetter, M.G., Anderson, W.F., Remington, S.J.
(1981) Nature 290: 334 - Crystallographic Determination of the Mode of Binding of Oligosaccharides to T4 Bacteriophage Lysozyme. Implications for the Mechanism of Catalysis
Anderson, W.F., Gruetter, M.G., Remington, S.J., Weaver, L.H., Matthews, B.W.
(1981) J Mol Biol 147: 523 - Relation between Hen Egg White Lysozyme and Bacteriophage T4 Lysozyme. Evolutionary Implications
Matthews, B.W., Remington, S.J., Gruetter, M.G., Anderson, W.F.
(1981) J Mol Biol 147: 545 - Structure of the Lysozyme from Bacteriophage T4, an Electron Density Map at 2.4 Angstroms Resolution
Remington, S.J., Anderson, W.F., Owen, J., Teneyck, L.F., Grainger, C.T., Matthews, B.W.
(1978) J Mol Biol 118: 81 - Atomic Coordinates for T4 Phage Lysozyme
Remington, S.J., Teneyck, L.F., Matthews, B.W.
(1977) Biochem Biophys Res Commun 75: 265 - Comparison of the Predicted and Observed Secondary Structure of T4 Phage Lysozyme
Matthews, B.W.
(1975) Biochim Biophys Acta 405: 442 - The Three Dimensional Structure of the Lysozyme from Bacteriophage T4
Matthews, B.W., Remington, S.J.
(1974) Proc Natl Acad Sci U S A 71: 4178 - Crystallographic Data for Lysozyme from Bacteriophage T4
Matthews, B.W., Dahlquist, F.W., Maynard, A.Y.
(1973) J Mol Biol 78: 575
Packing interactions in bacteriophage T4 lysozyme were explored by determining the structural and thermodynamic effects of substitutions for Ala98 and neighboring residues. Ala98 is buried in the core of T4 lysozyme in the interface between two alpha-helices ...
Packing interactions in bacteriophage T4 lysozyme were explored by determining the structural and thermodynamic effects of substitutions for Ala98 and neighboring residues. Ala98 is buried in the core of T4 lysozyme in the interface between two alpha-helices. The Ala98 to Val (A98V) replacement is a temperature-sensitive lesion that lowers the denaturation temperature of the protein by 15 degrees C (pH 3.0, delta delta G = -4.9 kcal/mol) and causes atoms within the two helices to move apart by up to 0.7 A. Additional structural shifts also occur throughout the C-terminal domain. In an attempt to compensate for the A98V replacement, substitutions were made for Val149 and Thr152, which make contact with residue 98. Site-directed mutagenesis was used to construct the multiple mutants A98V/T152S, A98V/V149C/T152S and the control mutants T152S, V149C and A98V/V149I/T152S. These proteins were crystallized, and their high-resolution X-ray crystal structures were determined. None of the second-site substitutions completely alleviates the destabilization or the structural changes caused by A98V. The changes in stability caused by the different mutations are not additive, reflecting both direct interactions between the sites and structural differences among the mutants. As an example, when Thr152 in wild-type lysozyme is replaced with serine, the protein is destabilized by 2.6 kcal/mol. Except for a small movement of Val94 toward the cavity created by removal of the methyl group, the structure of the T152S mutant is very similar to wild-type T4 lysozyme. In contrast, the same Thr152 to Ser replacement in the A98V background causes almost no change in stability. Although the structure of A98V/T152S remains similar to A98V, the combination of T152S with A98V allows relaxation of some of the strain introduced by the Ala98 to Val replacement. These studies show that removal of methyl groups by mutation can be stabilizing (Val98----Ala), neutral (Thr152----Ser in A98V) or destabilizing (Val149----Cys, Thr152----Ser). Such diverse thermodynamic effects are not accounted for by changes in buried surface area or free energies of transfer of wild-type and mutant side-chains. In general, the changes in protein stability caused by a mutation depend not only on changes in the free energy of transfer associated with the substitution, but also on the structural context within which the mutation occurs and on the ability of the surrounding structure to relax in response to the substitution.(ABSTRACT TRUNCATED AT 400 WORDS)
Related Citations:
Organizational Affiliation:
Department of Physics, University of Oregon, Eugene, 97403.
