1KQL | pdb_00001kql

Crystal structure of the C-terminal region of striated muscle alpha-tropomyosin at 2.7 angstrom resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 
    0.289 (Depositor), 0.292 (DCC) 
  • R-Value Work: 
    0.252 (Depositor), 0.251 (DCC) 
  • R-Value Observed: 
    0.255 (Depositor) 

Starting Model: experimental
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This is version 1.6 of the entry. See complete history

Literature

The crystal structure of the C-terminal fragment of striated-muscle alpha-tropomyosin reveals a key troponin T recognition site.

Li, Y.Mui, S.Brown, J.H.Strand, J.Reshetnikova, L.Tobacman, L.S.Cohen, C.

(2002) Proc Natl Acad Sci U S A 99: 7378-7383

  • DOI: https://doi.org/10.1073/pnas.102179999
  • Primary Citation Related Structures: 
    1KQL

  • PubMed Abstract: 

    Contraction in striated and cardiac muscles is regulated by the motions of a Ca(2+)-sensitive tropomyosin/troponin switch. In contrast, troponin is absent in other muscle types and in nonmuscle cells, and actomyosin regulation is myosin-linked. Here we report an unusual crystal structure at 2.7 A of the C-terminal 31 residues of rat striated-muscle alpha-tropomyosin (preceded by a fragment of the GCN4 leucine zipper). The C-terminal 22 residues (263-284) of the structure do not form a two-stranded alpha-helical coiled coil as does the rest of the molecule, but here the alpha-helices splay apart and are stabilized by the formation of a tail-to-tail dimer with a symmetry-related molecule. The site of splaying involves a small group of destabilizing core residues that is present only in striated muscle tropomyosin isoforms. These results reveal a specific recognition site for troponin T and clarify the physical basis for the unique regulatory mechanism of striated muscles.


  • Organizational Affiliation
    • Rosenstiel Basic Medical Sciences Research Center, Brandeis University, Waltham, MA 02454-9110, USA.

Macromolecule Content 

  • Total Structure Weight: 13.21 kDa 
  • Atom Count: 919 
  • Modeled Residue Count: 109 
  • Deposited Residue Count: 112 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Fusion Protein of and striated muscle alpha-tropomyosin and the GCN4 leucine zipper
A, B
56Saccharomyces cerevisiaeRattus norvegicus
This entity is chimeric
Mutation(s): 0 
UniProt
Find proteins for P03069 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P03069 
Go to UniProtKB:  P03069
Find proteins for P04692 (Rattus norvegicus)
Explore P04692 
Go to UniProtKB:  P04692
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsP03069P04692
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free:  0.289 (Depositor), 0.292 (DCC) 
  • R-Value Work:  0.252 (Depositor), 0.251 (DCC) 
  • R-Value Observed: 0.255 (Depositor) 
Space Group: P 64 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 137.202α = 90
b = 137.202β = 90
c = 40.071γ = 120
Software Package:
Software NamePurpose
AMoREphasing
CNSrefinement
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2002-05-29
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-07-26
    Changes: Refinement description, Source and taxonomy
  • Version 1.4: 2022-12-21
    Changes: Database references
  • Version 1.5: 2024-03-13
    Changes: Data collection, Source and taxonomy
  • Version 1.6: 2024-04-03
    Changes: Refinement description