1KNG

Crystal structure of CcmG reducing oxidoreductase at 1.14 A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.14 Å
  • R-Value Free: 0.151 

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This is version 1.2 of the entry. See complete history


Literature

Structure of CcmG/DsbE at 1.14 A resolution: high-fidelity reducing activity in an indiscriminately oxidizing environment

Edeling, M.A.Guddat, L.W.Fabianek, R.A.Thony-Meyer, L.Martin, J.L.

(2002) Structure 10: 973-979

  • DOI: https://doi.org/10.1016/s0969-2126(02)00794-3
  • Primary Citation of Related Structures:  
    1KNG

  • PubMed Abstract: 
  • CcmG is unlike other periplasmic thioredoxin (TRX)-like proteins in that it has a specific reducing activity in an oxidizing environment and a high fidelity of interaction. These two unusual properties are required for its role in c-type cytochrome maturation ...

    CcmG is unlike other periplasmic thioredoxin (TRX)-like proteins in that it has a specific reducing activity in an oxidizing environment and a high fidelity of interaction. These two unusual properties are required for its role in c-type cytochrome maturation. The crystal structure of CcmG reveals a modified TRX fold with an unusually acidic active site and a groove formed from two inserts in the fold. Deletion of one of the groove-forming inserts disrupts c-type cytochrome formation. Two unique structural features of CcmG-an acidic active site and an adjacent groove-appear to be necessary to convert an indiscriminately binding scaffold, the TRX fold, into a highly specific redox protein.


    Related Citations: 
    • Crystallization and preliminary diffraction studies of native and selenomethionine CcmG (CycY, DsbE)
      Edeling, M.A., Guddat, L.W., Fabianek, R.A., Halliday, J.A., Jones, A., Thony-Meyer, L., Martin, J.L.
      (2001) Acta Crystallogr D Biol Crystallogr 57: 1293
    • Characterization of the Bradyrhizobium japonicum CycY protein, a membrane-anchored periplasmic thioredoxin that may play a role as a reductant in the biogenesis of c-type cytochromes
      Fabianek, R.A., Huber-Wunderlich, M., Glockshuber, R., Kunzler, P., Hennecke, H., Thony-Meyer, L.
      (1997) J Biol Chem 272: 4467
    • The active-site cysteines of the periplasmic thioredoxin-like protein CcmG of Escherichia coli are important but not essential for cytochrome c maturation in vivo.
      Fabianek, R.A., Hennecke, H., Thony-Meyer, L.
      (1998) J Bacteriol 180: 1947

    Organizational Affiliation

    Centre for Drug Design and Development and Special Research Centre for Functional and Applied Genomics, Institute for Molecular Bioscience, Brisbane QLD 4072, Australia.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
THIOL:DISULFIDE INTERCHANGE PROTEIN CYCY156Bradyrhizobium japonicumMutation(s): 0 
Gene Names: cycY
UniProt
Find proteins for P30960 (Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110))
Explore P30960 
Go to UniProtKB:  P30960
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP30960
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.14 Å
  • R-Value Free: 0.151 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 35.1α = 90
b = 48.2β = 90
c = 90.2γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing
SHARPphasing
SOLOMONphasing
SHELXL-97refinement

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2002-07-17
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance