1J2Z

Crystal structure of UDP-N-acetylglucosamine acyltransferase

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.222 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history. 

Literature

Crystal structure of UDP-N-acetylglucosamine acyltransferase from Helicobacter pylori

Lee, B.I., Suh, S.W.

(2003) Proteins 53: 772-774


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
A
270Helicobacter pylori (strain ATCC 700392 / 26695)Mutation(s): 0 
Gene Names: lpxA
EC: 2.3.1.129
Find proteins for O25927 (Helicobacter pylori (strain ATCC 700392 / 26695))
Go to UniProtKB:  O25927
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4
Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
TLA
Query on TLA
Download SDF File 
Download CCD File 
A
L(+)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-JCYAYHJZSA-N
 Ligand Interaction
SOG
Query on SOG
Download SDF File 
Download CCD File 
A
2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL
1-S-OCTYL-BETA-D-THIOGLUCOSIDE
C14 H28 O5 S
CGVLVOOFCGWBCS-RGDJUOJXSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.222 
  • Space Group: P 63 2 2
Unit Cell:
Length (Å)Angle (°)
a = 90.686α = 90.00
b = 90.686β = 90.00
c = 148.203γ = 120.00
Software Package:
Software NamePurpose
CNSphasing
MOSFLMdata reduction
CCP4data scaling
CNSrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots


View more in-depth experimental data

Entry History 

Deposition Data

  • Deposited Date: 2003-01-15 
  • Released Date: 2004-01-27 
  • Deposition Author(s): Lee, B.I., Suh, S.W.

Revision History 

  • Version 1.0: 2004-01-27
    Type: Initial release
  • Version 1.1: 2008-04-27
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Derived calculations, Version format compliance