1IJS

CPV (STRAIN D) mutant A300D, complex (VIRAL COAT/DNA), VP2, PH=7.5, T=4 DEGREES C


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structural analysis of a mutation in canine parvovirus which controls antigenicity and host range.

Llamas-Saiz, A.L.Agbandje-McKenna, M.Parker, J.S.Wahid, A.T.Parrish, C.R.Rossmann, M.G.

(1996) Virology 225: 65-71

  • DOI: 10.1006/viro.1996.0575
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • A single mutation in canine parvovirus (CPV) of VP2 residue 300 from alanine to aspartic acid causes a loss of canine host range and alters the antigenic properties of the virus. The three-dimensional structure of this mutant has been solved to 3.25 ...

    A single mutation in canine parvovirus (CPV) of VP2 residue 300 from alanine to aspartic acid causes a loss of canine host range and alters the antigenic properties of the virus. The three-dimensional structure of this mutant has been solved to 3.25 A resolution. Crystals of full particles were triclinic, with cell dimensions of a = 267.6, b = 268.5, c = 274.3 A. alpha = 61.9, beta = 62.6, and gamma = 60.2 degrees. The native structure of CPV was used as an initial model. Phases were improved by real-space electron density averaging. In spite of the relative low percentage of observed reflections (32.5% of the data between 15.0 and 3.25 A resolution), the presence of 60-fold noncrystallographic redundancy allowed the averaging procedure to converge smoothly. The mutant aspartic acid at residue 300 forms a salt bridge with Arg81 in an icosahedrally threefold-related subunit, inducing local changes within the antigenic site B on the CPV surface. In addition, the loop between residues 359 and 374 adopts a conformation similar to that displayed by feline panleukopenia virus. The ability of the Ala300-->Asp mutant to evade antibody binding can be associated with the change of charge distribution and structure in the antigenic binding site. The variation in host range behavior may be due to the increased stability as a result of formation of the salt bridge between adjacent subunits.


    Related Citations: 
    • Structure, Sequence, and Function Correlations Among Parvoviruses
      Chapman, M.S., Rossmann, M.G.
      (1993) Virology 194: 491
    • Determination and Refinement of the Canine Parvovirus Empty-Capsid Structure
      Wu, H., Keller, W., Rossmann, M.G.
      (1993) Acta Crystallogr D Biol Crystallogr 49: 572
    • Structure Determination of Monoclinic Canine Parvovirus
      Tsao, J., Chapman, M.S., Wu, H., Agbandje, M., Keller, W., Rossmann, M.G.
      (1992) Acta Crystallogr B 48: 75
    • The Three-Dimensional Structure of Canine Parvovirus and its Functional Implications
      Tsao, J., Chapman, M.S., Agbandje, M., Keller, W., Smith, K., Wu, H., Luo, M., Smith, T.J., Rossmann, M.G., Compans, R.W.
      (1991) Science 251: 1456

    Organizational Affiliation

    Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907-1392, USA.



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
PROTEIN (PARVOVIRUS COAT PROTEIN)P584Canine parvovirusMutation(s): 1 
Find proteins for P17455 (Canine parvovirustype 2 (isolate Dog/United States/CPV-d/1988))
Explore P17455 
Go to UniProtKB:  P17455
Protein Feature View
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  • Reference Sequence
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Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(*CP*CP*AP*CP*CP*CP*CP*AP*A)-3')N9Canine parvovirus
  • Find similar nucleic acids by: Sequence   |   Structure
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(*AP*C)-3')A2Canine parvovirus
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 267.6α = 61.9
b = 268.5β = 62.6
c = 274.3γ = 60.2
Software Package:
Software NamePurpose
PURDUEdata collection
PURDUEdata reduction
PURDUEmodel building
NONErefinement
PURDUEdata scaling
PURDUEphasing

Structure Validation

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Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1996-12-23
    Type: Initial release
  • Version 1.1: 2008-05-22
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2011-11-02
    Changes: Structure summary