Macromolecule Content

• Total Structure Weight: 8.33 kDa 
• Atom Count: 583 
• Residue Count: 81 
• Unique protein chains: 1

1GJX

Solution structure of the lipoyl domain of the chimeric dihydrolipoyl dehydrogenase P64K from Neisseria meningitidis

• DOI: 10.2210/pdb1GJX/pdb
• BMRB: 5067

• Classification: OXIDOREDUCTASE
• Organism(s): Neisseria meningitidis
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2001-08-03 Released: 2001-11-28 
• Deposition Author(s): Tozawa, K., Broadhurst, R.W., Raine, A.R.C., Fuller, C., Alvarez, A., Guillen, G., Padron, G., Perham, R.N.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 40 
• Conformers Submitted: 18 
• Selection Criteria: NO VIOLATIONS, LOWEST ENERGY 

Literature

Solution Structure of the Lipoyl Domain of the Chimeric Dihydrolipoyl Dehydrogenase P64K from Neisseria Meningitidis

Tozawa, K., Broadhurst, R.W., Raine, A.R., Fuller, C., Alvarez, A., Guillen, G., Padron, G., Perham, R.N.

(2001) Eur J Biochem 268: 4908

• PubMed: 11559360 
• DOI: 10.1046/j.0014-2956.2001.02422.x
• Structures With Same Primary Citation


• PubMed Abstract: 
  

The antigenic P64K protein from the pathogenic bacterium Neisseria meningitidis is found in the outer membrane of the cell, and consists of two parts: an 81-residue N-terminal region and a 482-residue C-terminal region. The amino-acid sequence of the N-terminal region is homologous with the lipoyl domains of the dihydrolipoyl acyltransferase (E2) components, and that of the C-terminal region with the dihydrolipoyl dehydrogenase (E3) components, of 2-oxo acid dehydrogenase multienzyme complexes. The two parts are separated by a long linker region, similar to the linker regions in the E2 chains of 2-oxo acid dehydrogenase complexes, and it is likely this region is conformationally flexible. A subgene encoding the P64K lipoyl domain was created and over-expressed in Escherichia coli. The product was capable of post-translational modification by the lipoate protein ligase but not aberrant modification by the biotin protein ligase of E. coli. The solution structure of the apo-domain was determined by means of heteronuclear NMR spectroscopy and found to be a flattened beta barrel composed of two four-stranded antiparallel beta sheets. The lysine residue that becomes lipoylated is in an exposed beta turn that, from a [1H]-15N heteronuclear Overhauser effect experiment, appears to enjoy substantial local motion. This structure of a lipoyl domain derived from a dihydrolipoyl dehydrogenase resembles that of lipoyl domains normally found as part of the dihydrolipoyl acyltransferase component of 2-oxo acid dehydrogenase complexes and will assist in furthering the understanding of its function in a multienzyme complex and in the membrane-bound P64K protein itself.

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Organizational Affiliation: 

Cambridge Centre for Molecular Recognition, Department of Biochemistry, University of Cambridge, UK.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
PYRUVATE DEHYDROGENASE	A	81	Neisseria meningitidis	Mutation(s): 0  EC: 1.8.1.4
Find proteins for Q9JZ09 (Neisseria meningitidis serogroup B (strain MC58)) Explore Q9JZ09  Go to UniProtKB:  Q9JZ09

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 40 
• Conformers Submitted: 18 
• Selection Criteria: NO VIOLATIONS, LOWEST ENERGY 
• OLDERADO: 1GJX Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2001-08-03 
• Released Date: 2001-11-28 
Deposition Author(s): Tozawa, K., Broadhurst, R.W., Raine, A.R.C., Fuller, C., Alvarez, A., Guillen, G., Padron, G., Perham, R.N.

Revision History 

• Version 1.0: 2001-11-28
  Type: Initial release
  
• Version 1.1: 2011-05-08
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance