Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Cyclic - C2  (3D View)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Cyclic - C2  (3D View)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 55361.64 
• Atom Count: 3645 
• Residue Count: 492 
• Unique protein chains: 1

1GEF

Crystal structure of the archaeal holliday junction resolvase HJC

• DOI: 10.2210/pdb1GEF/pdb

• Classification: HYDROLASE
• Organism(s): Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
• Expression System: Escherichia coli BL21


• Deposited: 2000-11-08 Released: 2001-03-21 
• Deposition Author(s): Nishino, T., Komori, K., Tsuchiya, D., Ishino, Y., Morikawa, K.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2 Å
• R-Value Free: 0.260 
• R-Value Work: 0.224 

Literature

Crystal structure of the archaeal holliday junction resolvase Hjc and implications for DNA recognition.

Nishino, T., Komori, K., Tsuchiya, D., Ishino, Y., Morikawa, K.

(2001) Structure 9: 197-204

• PubMed: 11286886 


• PubMed Abstract: 
  

Homologous recombination is a crucial mechanism in determining genetic diversity and repairing damaged chromosomes. Holliday junction is the universal DNA intermediate whose interaction with proteins is one of the major events in the recombinational process. Hjc is an archaeal endonuclease, which specifically resolves the junction DNA to produce two separate recombinant DNA duplexes. The atomic structure of Hjc should clarify the mechanisms of the specific recognition with Holliday junction and the catalytic reaction.

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Organizational Affiliation: 

Department of Structural Biology, Biomolecular Engineering Research Institute, 6-2-3 Furuedai, Suita, Osaka 565-0874, Japan.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
HOLLIDAY JUNCTION RESOLVASE	A, B, D, E	123	Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)	Mutation(s): 0  Gene Names: hjc EC: 3.1.22.4
Find proteins for E7FHX4 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)) Go to UniProtKB:  E7FHX4

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
SO4	B, E	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2 Å
• R-Value Free: 0.260 
• R-Value Work: 0.224 
• Space Group: P 1 2₁ 1

Unit Cell:

Length (Å)	Angle (°)
a = 36.245	α = 90.00
b = 119.056	β = 90.66
c = 63.146	γ = 90.00

Software Package:

Software Name	Purpose
CNS	refinement
DENZO	data reduction
SHARP	phasing
SCALEPACK	data scaling

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2000-11-08 
• Released Date: 2001-03-21 
• Deposition Author(s): Nishino, T., Komori, K., Tsuchiya, D., Ishino, Y., Morikawa, K.

Revision History 

• Version 1.0: 2001-03-21
  Type: Initial release
• Version 1.1: 2008-04-27
  Type: Version format compliance
• Version 1.2: 2011-07-13
  Type: Version format compliance