1FO0

MURINE ALLOREACTIVE SCFV TCR-PEPTIDE-MHC CLASS I MOLECULE COMPLEX

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.225 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history. 

Literature

Crystal structure of a T cell receptor bound to an allogeneic MHC molecule.

Reiser, J.B., Darnault, C., Guimezanes, A., Gregoire, C., Mosser, T., Schmitt-Verhulst, A.-M., Fontecilla-Camps, J.C., Malissen, B., Housset, D., Mazza, G.

(2000) Nat.Immunol. 1: 291-297

  • DOI: 10.1038/79728

  • PubMed Abstract: 

    • Many T cell receptors (TCRs) that are selected to respond to foreign peptide antigens bound to self major histocompatibility complex (MHC) molecules are also reactive with allelic variants of self-MHC molecules. This property, termed alloreactivity, ...

    Many T cell receptors (TCRs) that are selected to respond to foreign peptide antigens bound to self major histocompatibility complex (MHC) molecules are also reactive with allelic variants of self-MHC molecules. This property, termed alloreactivity, causes graft rejection and graft-versus-host disease. The structural features of alloreactivity have yet to be defined. We now present a basis for this cross-reactivity, elucidated by the crystal structure of a complex involving the BM3.3 TCR and a naturally processed octapeptide bound to the H-2Kb allogeneic MHC class I molecule. A distinguishing feature of this complex is that the eleven-residue-long complementarity-determining region 3 (CDR3) found in the BM3.3 TCR alpha chain folds away from the peptide binding groove and makes no contact with the bound peptide, the latter being exclusively contacted by the BM3.3 CDR3 beta. Our results formally establish that peptide-specific, alloreactive TCRs interact with allo-MHC in a register similar to the one they use to contact self-MHC molecules.

    Related Citations: 
    • The Three-Dimensional Structure of a T Cell Receptor Valpha-Vbeta Heterodimer Reveals a Novel Arrangement of the Vbeta Domain
      Housset, D.,Mazza, G.,Gregoire, C.,Piras, C.,Malissen, B.,Fontecilla-Camps, J.C.
      (1997) Embo J. 16: 4205
    • Crystal Structure of an H-2Kb-Ovalbumin Peptide Com Reveals the Interplay of Primary and Secondary Anchor Positions in the Major Histocompatibility Complex Binding Groove
      Fremont, D.H.,Stura, E.A.,Matsumura, M.,Peterson, P.A.,Wilson, I.A.
      (1995) Proc.Natl.Acad.Sci.USA 92: 2479
    • Structural Basis of Plasticity in T Cell Receptor Recognition of a Self Peptide-Mhc Antigen
      Garcia, K.C.,Degano, M.,Pease, L.R.,Huang, M.,Peterson, P.A.,Teyton, L.,Wilson, I.A.
      (1998) Science 279: 1166
    • Two Human T Cell Receptors Bind in a Similar Mode To the Hla-A2/Tax Peptide Complex Using Different Tcr Amino-acids
      Ding, Y.H.,Smith, K.J.,Garboczi, D.N.,Utz, U.,Bidisson, W.E.,Wiley, D.C.
      (1998) Immunity 8: 1
    • Each of Two Productive T Cell Receptor Alpha-Gene Rearrangements Found in Both the A10 and Bm3.3 Cell Clones Give Rise to an Alpha Chain which Can Contribute to the Constitution of a Surface-Expressed Alpha-Beta Dimer
      Couez, D.,Malissen, M.,Buferne, M.,Schmitt-Verhulst, A.-M.,Malissen, B.
      (1991) Int.Immunol. 3: 719
    • Structure of the Complex between Human T Cell Receptor, Viral Peptide and Hla-A2
      Garboczi, D.N.,Ghosh, P.,Utz, U.,Fan, Q.R.,Bidisson, W.E.,Wiley, D.
      (1996) Nature 384: 134

    Organizational Affiliation: 

    Laboratoire de Cristallographie et Cristallogénèse des Protéines, Institut de Biologie Structurale J.-P. Ebel, CEA-CNRS-UJF, 41, rue Jules Horowitz, F-38027 Grenoble, France.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PROTEIN (ALLOGENEIC H-2KB MHC CLASS I MOLECULE)
H
276Mus musculusMutation(s): 0 
Gene Names: H2-K1 (H2-K)
Find proteins for P01901 (Mus musculus)
Go to UniProtKB:  P01901
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
PROTEIN (BETA-2 MICROGLOBULIN)
L
99Mus musculusMutation(s): 0 
Gene Names: B2m
Find proteins for P01887 (Mus musculus)
Go to UniProtKB:  P01887
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
NATURALLY PROCESSED OCTAPEPTIDE PBM1
P
8Mus musculusMutation(s): 0 
Gene Names: Kctd20
Find proteins for Q8CDD8 (Mus musculus)
Go to UniProtKB:  Q8CDD8
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
PROTEIN (BM3.3 T CELL RECEPTOR ALPHA-CHAIN)
A
116Mus musculusMutation(s): 0 
Gene Names: TRADV16D (TRAV16)
Find proteins for Q5R1F1 (Mus musculus)
Go to UniProtKB:  Q5R1F1
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
PROTEIN (BM3.3 T CELL RECEPTOR BETA-CHAIN)
B
112Mus musculusMutation(s): 0 
Find proteins for P04214 (Mus musculus)
Go to UniProtKB:  P04214
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.225 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 76.580α = 90.00
b = 120.420β = 90.00
c = 102.850γ = 90.00
Software Package:
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
REFMACrefinement
AMoREphasing
CCP4data scaling

Structure Validation

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View more in-depth experimental data

Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2000-10-02
    Type: Initial release
  • Version 1.1: 2008-04-27
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2017-02-01
    Type: Database references, Structure summary