1EBO | pdb_00001ebo

CRYSTAL STRUCTURE OF THE EBOLA VIRUS MEMBRANE-FUSION SUBUNIT, GP2, FROM THE ENVELOPE GLYCOPROTEIN ECTODOMAIN


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 
    0.256 (Depositor) 
  • R-Value Work: 
    0.239 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 1EBO

This is version 1.4 of the entry. See complete history

Literature

Crystal structure of the Ebola virus membrane fusion subunit, GP2, from the envelope glycoprotein ectodomain.

Weissenhorn, W.Carfi, A.Lee, K.H.Skehel, J.J.Wiley, D.C.

(1998) Mol Cell 2: 605-616

  • DOI: https://doi.org/10.1016/s1097-2765(00)80159-8
  • Primary Citation Related Structures: 
    1EBO

  • PubMed Abstract: 

    We have determined the structure of GP2 from the Ebola virus membrane fusion glycoprotein by X-ray crystallography. The molecule contains a central triple-stranded coiled coil followed by a disulfide-bonded loop homologous to an immunosuppressive sequence in retroviral glycoproteins, which reverses the chain direction and connects to an alpha helix packed antiparallel to the core helices. The structure suggests that fusion peptides near the N termini form disulfide-bonded loops at one end of the molecule and that the C-terminal membrane anchors are at the same end. In this conformation, GP2 could both bridge two membranes and facilitate their apposition to initiate membrane fusion. We also find a heptad irregularity like that in low-pH-induced influenza HA2 and a solvent ion trapped in a coiled coil like that in retroviral TMs.


  • Organizational Affiliation
    • Laboratory of Molecular Medicine, Howard Hughes Medical Institute, Children's Hospital, Boston, Massachusetts 02115, USA.

Macromolecule Content 

  • Total Structure Weight: 92.42 kDa 
  • Atom Count: 5,331 
  • Modeled Residue Count: 671 
  • Deposited Residue Count: 786 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
EBOLA VIRUS ENVELOPE PROTEIN CHIMERA CONSISTING OF A FRAGMENT OF GCN4 ZIPPER CLONED N-TERMINAL TO A FRAGMENT OF GP2
A, B, C, D, E
A, B, C, D, E, F
131Orthoebolavirus sp.Mutation(s): 0 
UniProt
Find proteins for O11457 (Zaire ebolavirus (strain Gabon-94))
Explore O11457 
Go to UniProtKB:  O11457
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO11457
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free:  0.256 (Depositor) 
  • R-Value Work:  0.239 (Depositor) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 171.702α = 90
b = 32.691β = 119.23
c = 168.863γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
CCP4model building
X-PLORrefinement
CCP4phasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1999-07-02
    Type: Initial release
  • Version 1.1: 2008-04-26
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-12-21
    Changes: Database references, Derived calculations
  • Version 1.4: 2024-11-13
    Changes: Data collection, Structure summary