1DWA
STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL. PART 1: STRUCTURE PRIOR TO IRRADIATION
- PDB DOI: https://doi.org/10.2210/pdb1DWA/pdb
- Classification: HYDROLASE
- Organism(s): Sinapis alba
- Mutation(s): No 
- Deposited: 1999-12-05 Released: 2000-03-03 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.179 
- R-Value Work: 0.165 
- R-Value Observed: 0.165 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
MYROSINASE MA1 | A [auth M] | 499 | Sinapis alba | Mutation(s): 0  EC: 3.2.1.147 | |
UniProt | |||||
Find proteins for P29736 (Sinapis alba) Explore P29736  Go to UniProtKB:  P29736 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P29736 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | B [auth A], E [auth D] | 2 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G42666HT GlyCosmos:  G42666HT GlyGen:  G42666HT |
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-xylopyranose-(1-2)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose | C [auth B] | 5 | N/A | ||
Glycosylation Resources | |||||
GlyTouCan:  G06206UV GlyCosmos:  G06206UV GlyGen:  G06206UV |
Entity ID: 4 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-xylopyranose-(1-2)-[alpha-D-mannopyranose-(1-3)][alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose | D [auth C] | 7 | N/A | ||
Glycosylation Resources | |||||
GlyTouCan:  G26295XE GlyCosmos:  G26295XE GlyGen:  G26295XE |
Small Molecules
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | F [auth M] G [auth M] H [auth M] I [auth M] J [auth M] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
SO4 Query on SO4 | M N [auth M] O [auth M] P [auth M] Q [auth M] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL Query on GOL | U [auth M], V [auth M], W [auth M], X [auth M], Y [auth M] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
ZN Query on ZN | L [auth M] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.179 
- R-Value Work: 0.165 
- R-Value Observed: 0.165 
- Space Group: C 2 2 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 134.3 | α = 90 |
b = 136.4 | β = 90 |
c = 80.3 | γ = 90 |
Software Name | Purpose |
---|---|
X-PLOR | refinement |
MOSFLM | data reduction |
SCALA | data scaling |
X-PLOR | phasing |
Entry History 
Deposition Data
- Released Date: 2000-03-03  Deposition Author(s): Burmeister, W.P.
Revision History (Full details and data files)
- Version 1.0: 2000-03-03
Type: Initial release - Version 1.1: 2011-07-07
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2017-07-12
Changes: Advisory - Version 1.4: 2019-05-08
Changes: Data collection, Experimental preparation - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Other, Structure summary - Version 2.1: 2023-12-13
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary