1DQU

CRYSTAL STRUCTURE OF THE ISOCITRATE LYASE FROM ASPERGILLUS NIDULANS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.376 
  • R-Value Work: 0.273 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

The crystal structure and active site location of isocitrate lyase from the fungus Aspergillus nidulans.

Britton, K.Langridge, S.Baker, P.J.Weeradechapon, K.Sedelnikova, S.E.De Lucas, J.R.Rice, D.W.Turner, G.

(2000) Structure Fold.Des. 8: 349-362


  • PubMed Abstract: 
  • Isocitrate lyase catalyses the first committed step of the carbon-conserving glyoxylate bypass, the Mg(2+)-dependent reversible cleavage of isocitrate into succinate and glyoxylate. This metabolic pathway is an inviting target for the control of a nu ...

    Isocitrate lyase catalyses the first committed step of the carbon-conserving glyoxylate bypass, the Mg(2+)-dependent reversible cleavage of isocitrate into succinate and glyoxylate. This metabolic pathway is an inviting target for the control of a number of diseases, because the enzymes involved in this cycle have been identified in many pathogens including Mycobacterium leprae and Leishmania.


    Related Citations: 
    • Isocitrate Lyase from Aspergillus Nidulans: Crystallization and X-ray Analysis of a Glyoxylate Cycle Enzyme.
      Langridge, S.J.,Baker, P.J.,De Lucas, J.R.,Sedelnikova, S.E.,Turner, G.,Rice, D.W.
      (1997) Acta Crystallogr.,Sect.D 53: 488


    Organizational Affiliation

    Department of Molecular Biology and Biotechnology, Krebs Institute for Biomolecular Research, The University of Sheffield, Sheffield, S10 2TN, UK.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ISOCITRATE LYASE
A
538Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)Gene Names: acuD
EC: 4.1.3.1
Find proteins for P28298 (Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139))
Go to UniProtKB:  P28298
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.376 
  • R-Value Work: 0.273 
  • Space Group: P 42 21 2
Unit Cell:
Length (Å)Angle (°)
a = 91.930α = 90.00
b = 91.930β = 90.00
c = 152.770γ = 90.00
Software Package:
Software NamePurpose
MOSFLMdata reduction
TNTrefinement
ROTAVATAdata scaling
MLPHAREphasing
CCP4data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2000-05-10
    Type: Initial release
  • Version 1.1: 2008-04-27
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Derived calculations, Version format compliance
  • Version 1.3: 2017-10-04
    Type: Advisory, Refinement description