1CKE

CMP KINASE FROM ESCHERICHIA COLI FREE ENZYME STRUCTURE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.205 
  • R-Value Observed: 0.205 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structures of escherichia coli CMP kinase alone and in complex with CDP: a new fold of the nucleoside monophosphate binding domain and insights into cytosine nucleotide specificity.

Briozzo, P.Golinelli-Pimpaneau, B.Gilles, A.M.Gaucher, J.F.Burlacu-Miron, S.Sakamoto, H.Janin, J.Barzu, O.

(1998) Structure 6: 1517-1527

  • DOI: 10.1016/s0969-2126(98)00150-6
  • Primary Citation of Related Structures:  
    1CKE, 2CMK

  • PubMed Abstract: 
  • . Nucleoside monophosphate kinases (NMP kinases) catalyze the reversible transfer of a phosphoryl group from a nucleoside triphosphate to a nucleoside monophosphate. Among them, cytidine monophosphate kinase from Escherichia coli has a striking particularity: it is specific for CMP, whereas in eukaryotes a unique UMP/CMP kinase phosphorylates both CMP and UMP with similar efficiency ...

    . Nucleoside monophosphate kinases (NMP kinases) catalyze the reversible transfer of a phosphoryl group from a nucleoside triphosphate to a nucleoside monophosphate. Among them, cytidine monophosphate kinase from Escherichia coli has a striking particularity: it is specific for CMP, whereas in eukaryotes a unique UMP/CMP kinase phosphorylates both CMP and UMP with similar efficiency.


    Related Citations: 
    • Cmp Kinase from Escherichia Coli is Structurally Related to Other Nucleoside Monophosphate Kinases
      Bucurenci, N., Sakamoto, H., Briozzo, P., Palibroda, N., Serina, L., Sarfati, R.S., Labesse, G., Briand, G., Danchin, A., Barzu, O., Gilles, A.M.
      (1996) J Biol Chem 271: 2856
    • The Cmk Gene Encoding Cytidine Monophosphate Kinase is Located in the rspA Operon and is Required for Normal Replication Rate in Escherichia Coli
      Fricke, J., Neuhard, J., Kelln, R.A., Pedersen, S.
      (1995) J Bacteriol 177: 517

    Organizational Affiliation

    Laboratoire de Chimie Biologique Institut National Agronomique Paris-Grignon 78850 Thiverval-Grignon France. Pierre.Briozzo@lebs. cnrs-gif.fr



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
PROTEIN (CYTIDINE MONOPHOSPHATE KINASE)A227Escherichia coliMutation(s): 0 
EC: 2.7.4.14 (PDB Primary Data), 2.7.4.25 (UniProt)
Find proteins for P0A6I0 (Escherichia coli (strain K12))
Explore P0A6I0 
Go to UniProtKB:  P0A6I0
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
B [auth A]SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.205 
  • R-Value Observed: 0.205 
  • Space Group: P 63
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 82.721α = 90
b = 82.721β = 90
c = 61.077γ = 120
Software Package:
Software NamePurpose
SHARPphasing
X-PLORrefinement
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1999-09-20
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance