1CEX

STRUCTURE OF CUTINASE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1 Å
  • R-Value Free: 0.119 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Atomic resolution (1.0 A) crystal structure of Fusarium solani cutinase: stereochemical analysis.

Longhi, S.Czjzek, M.Lamzin, V.Nicolas, A.Cambillau, C.

(1997) J.Mol.Biol. 268: 779-799

  • DOI: 10.1006/jmbi.1997.1000
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • X-ray data have been recorded to 1.0 A resolution from a crystal of Fusarium solani cutinase using synchrotron radiation and an imaging-plate scanner. The anisotropic treatment of thermal motion led to a fivefold increase in accuracy and to a conside ...

    X-ray data have been recorded to 1.0 A resolution from a crystal of Fusarium solani cutinase using synchrotron radiation and an imaging-plate scanner. The anisotropic treatment of thermal motion led to a fivefold increase in accuracy and to a considerable quality improvement in the electron density maps with respect to an intermediate isotropic model. The final model has an R-factor of 9.4%, with a mean coordinate error of 0.021 A, as estimated from inversion of the least-squares matrix. The availability of an accurate structure at atomic resolution and of meaningful estimates of the errors in its atomic parameters, allowed an extensive analysis of several stereochemical parameters, such as peptide planarity, main-chain and some side-chain bond distances. The hydrogen atoms could be clearly identified in the electron density, thus providing unambiguous evidence on the protonation state of the catalytic histidine residue. The atomic resolution revealed an appreciable extent of flexibility in the cutinase active site, which might be correlated with a possible adaptation to different substrates. The anisotropic treatment of thermal factors provided insights into the anisotropic nature of motions. The analysis of these motions in the two loops delimiting the catalytic crevice pointed out a "breath-like" movement in the substrate binding region of cutinase.


    Related Citations: 
    • Fusarium Solani Cutinase is a Lipolytic Enzyme with a Catalytic Serine Accessible to Solvent
      Martinez, C.,De Geus, P.,Lauwereys, M.,Matthyssens, G.,Cambillau, C.
      (1992) Nature 356: 615
    • Cutinase, a Lipolytic Enzyme with a Preformed Oxyanion Hole
      Martinez, C.,Nicolas, A.,Van Tilbeurgh, H.,Egloff, M.P.,Cudrey, C.,Verger, R.,Cambillau, C.
      (1994) Biochemistry 33: 83
    • Crystal Structure of Cutinase Covalently Inhibited by a Triglyceride Analogue
      Longhi, S.,Mannesse, M.,Verheij, H.M.,De Haas, G.H.,Egmond, M.,Knoops-Mouthuy, E.,Cambillau, C.
      (1997) Protein Sci. 6: 275
    • Dynamics of Fusarium Solani Cutinase Investigated Through Structural Comparison Among Different Crystal Forms of its Variants
      Longhi, S.,Nicolas, A.,Creveld, L.,Egmond, M.,Verrips, C.T.,De Vlieg, J.,Martinez, C.,Cambillau, C.
      (1996) Proteins 26: 442
    • Contribution of Cutinase Serine 42 Side Chain to the Stabilization of the Oxyanion Transition State
      Nicolas, A.,Egmond, M.,Verrips, C.T.,De Vlieg, J.,Longhi, S.,Cambillau, C.,Martinez, C.
      (1996) Biochemistry 35: 398


    Organizational Affiliation

    Architecture et Fonction des Macromolécules Biologiques UPR 9039, AFMB-CNRS, IFR1, Marseille, France.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
CUTINASE
A
214Fusarium solani subsp. pisiGene Names: CUT1 (CUTA)
EC: 3.1.1.74
Find proteins for P00590 (Fusarium solani subsp. pisi)
Go to UniProtKB:  P00590
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1 Å
  • R-Value Free: 0.119 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 35.120α = 90.00
b = 67.360β = 93.90
c = 37.050γ = 90.00
Software Package:
Software NamePurpose
SHELXL-93phasing
SHELXL-93model building
DENZOdata reduction
SHELXL-93refinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1997-08-20
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance