1BVO

DORSAL HOMOLOGUE GAMBIF1 BOUND TO DNA

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.219 
  • R-Value Observed: 0.219 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history. 


Literature

Structure of the specificity domain of the Dorsal homologue Gambif1 bound to DNA.

Cramer, P., Varrot, A., Barillas-Mury, C., Kafatos, F.C., Muller, C.W.

(1999) Structure 7: 841-852

  • DOI: 10.1016/s0969-2126(99)80107-5
  • Primary Citation of Related Structures:  
    1BVO

  • PubMed Abstract: 

    • NF-kappa B/Rel transcription factors play important roles in immunity and development in mammals and insects. Their activity is regulated by their cellular localization, homo- and heterodimerization and association with other factors on their target gene promoters ...

    NF-kappa B/Rel transcription factors play important roles in immunity and development in mammals and insects. Their activity is regulated by their cellular localization, homo- and heterodimerization and association with other factors on their target gene promoters. Gambif1 from Anopheles gambiae is a member of the Rel family and a close homologue of the morphogen Dorsal, which establishes dorsoventral polarity in the Drosophila embryo.

    Organizational Affiliation: 

    European Molecular Biology Laboratory, Grenoble Outstation, France.



Macromolecules

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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
TRANSCRIPTION FACTOR GAMBIF1C [auth A]175Anopheles gambiaeMutation(s): 0 
Gene Names: gambif1, REL1, AgaP_AGAP009515
UniProt
Find proteins for Q17034 (Anopheles gambiae)
Explore Q17034 
Go to UniProtKB:  Q17034
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ17034
Protein Feature View
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  • Reference Sequence

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Entity ID: 1
MoleculeChainsLengthOrganismImage
DNA DUPLEXA [auth D]15N/A
Protein Feature View
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  • Reference Sequence

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Entity ID: 2
MoleculeChainsLengthOrganismImage
DNA DUPLEXB [auth E]15N/A
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.219 
  • R-Value Observed: 0.219 
  • Space Group: P 43 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 87.61α = 90
b = 87.61β = 90
c = 96.16γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
X-PLORmodel building
X-PLORrefinement
X-PLORphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1999-07-12
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-01-11
    Changes: Other
  • Version 1.4: 2017-11-29
    Changes: Advisory, Derived calculations