1BVO

DORSAL HOMOLOGUE GAMBIF1 BOUND TO DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.219 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Structure of the specificity domain of the Dorsal homologue Gambif1 bound to DNA.

Cramer, P.Varrot, A.Barillas-Mury, C.Kafatos, F.C.Muller, C.W.

(1999) Structure Fold.Des. 7: 841-852


  • PubMed Abstract: 
  • NF-kappa B/Rel transcription factors play important roles in immunity and development in mammals and insects. Their activity is regulated by their cellular localization, homo- and heterodimerization and association with other factors on their target ...

    NF-kappa B/Rel transcription factors play important roles in immunity and development in mammals and insects. Their activity is regulated by their cellular localization, homo- and heterodimerization and association with other factors on their target gene promoters. Gambif1 from Anopheles gambiae is a member of the Rel family and a close homologue of the morphogen Dorsal, which establishes dorsoventral polarity in the Drosophila embryo.


    Organizational Affiliation

    European Molecular Biology Laboratory, Grenoble Outstation, France.




Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
TRANSCRIPTION FACTOR GAMBIF1
A
175Anopheles gambiaeGene Names: gambif1 (REL1)
Find proteins for Q17034 (Anopheles gambiae)
Go to UniProtKB:  Q17034
Entity ID: 1
MoleculeChainsLengthOrganism
DNA DUPLEXD15N/A
Entity ID: 2
MoleculeChainsLengthOrganism
DNA DUPLEXE15N/A
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.219 
  • Space Group: P 43 2 2
Unit Cell:
Length (Å)Angle (°)
a = 87.610α = 90.00
b = 87.610β = 90.00
c = 96.160γ = 90.00
Software Package:
Software NamePurpose
X-PLORmodel building
DENZOdata reduction
SCALEPACKdata scaling
X-PLORphasing
X-PLORrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1999-07-12
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2017-01-11
    Type: Other
  • Version 1.4: 2017-11-29
    Type: Advisory, Derived calculations