1BBT

METHODS USED IN THE STRUCTURE DETERMINATION OF FOOT AND MOUTH DISEASE VIRUS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Work: 0.169 

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This is version 1.2 of the entry. See complete history

Literature

Methods used in the structure determination of foot-and-mouth disease virus.

Fry, E.Acharya, R.Stuart, D.

(1993) Acta Crystallogr.,Sect.A 49: 45-55


  • PubMed Abstract: 
  • The structure of foot-and-mouth disease virus (FMDV) strain O1 BFS 1860 has been determined to 2.9 A resolution using the molecular-replacement method [Acharya, Fry, Stuart, Fox, Rowlands & Brown (1989). Nature (London), 337, 709-716]. Crystals of th ...

    The structure of foot-and-mouth disease virus (FMDV) strain O1 BFS 1860 has been determined to 2.9 A resolution using the molecular-replacement method [Acharya, Fry, Stuart, Fox, Rowlands & Brown (1989). Nature (London), 337, 709-716]. Crystals of the virus with average dimensions 0.12 x 0.06 x 0.12 mm belong to space group I23, a = 345 A with 1/12 of the icosahedral particle per asymmetric unit giving fivefold noncrystallographic redundancy. Oscillation diffraction photographs were collected at the SERC Synchrotron Radiation Source at Daresbury in accordance with strict disease security regulations. The ambiguity in particle orientation was resolved using a self-rotation function and starting estimates of the phases to 8 A were derived from the known structures of two picornaviruses similarly oriented in the I23 unit cell. The phases were refined and extended using iterative averaging and solvent flattening with the implementation of a simple automatic envelope-determination procedure to increase the phasing power available.


    Related Citations: 
    • Crystallization and Preliminary X-Ray Diffraction Analysis of Foot-and-Mouth Disease Virus
      Fox, G.,Stuart, D.,Acharya, K.R.,Fry, E.,Rowlands, D.,Brown, F.
      (1987) J.Mol.Biol. 196: 591
    • Implications of the Three-Dimensional Structure of Foot-and-Mouth Disease Virus for its Antigenicity and Cell Attachment
      Acharya, R.,Fry, E.,Stuart, D.,Fox, G.,Rowlands, D.,Brown, F.
      (1989) Vaccines 89: Modern Approaches to New Vaccines Including Prevention of Aids --: 1
    • Architecture and Topography of an Aphthovirus
      Fry, E.,Logan, D.,Acharya, R.,Fox, G.,Rowlands, D.,Brown, F.,Stuart, D.
      (1990) Semin.Virol. 1: 439
    • The Three-Dimensional Structure of Foot-and-Mouth Disease Virus at 2.9 Angstroms Resolution
      Acharya, R.,Fry, E.,Stuart, D.,Fox, G.,Rowlands, D.,Brown, F.
      (1989) Nature 337: 709
    • The Structure of Foot-and-Mouth Disease Virus: Implications for its Physical and Biological Properties
      Acharya, R.,Fry, E.,Stuart, D.,Fox, G.,Rowlands, D.,Brown, F.
      (1990) Vet.Microbiol. 23: 21
    • Structure of Foot-and-Mouth Disease Virus
      Acharya, R.,Fry, E.,Logan, D.,Stuart, D.I.,Fox, G.,Rowlands, D.,Brown, F.
      (1990) Use of X-Ray Crystallography in the Design of Antiviral Agents --: 161
    • Structural and Serological Evidence for a Novel Mechanism of Antigenic Variation in Foot-and-Mouth Disease Virus
      Parry, N.,Fox, G.,Rowlands, D.,Brown, F.,Fry, E.,Acharya, R.,Logan, D.,Stuart, D.
      (1990) Nature 347: 569
    • The Three-Dimensional Structure of Foot-and-Mouth Disease Virus
      Acharya, R.,Fry, E.,Logan, D.,Stuart, D.,Brown, F.,Fox, G.,Rowlands, D.
      (1990) New Aspects of Positive-Strand RNA Viruses --: 211


    Organizational Affiliation

    Laboratory of Molecular Biophysics, Oxford, England.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1)
1
213Foot-and-mouth disease virus
Find proteins for Q84771 (Foot-and-mouth disease virus)
Go to UniProtKB:  Q84771
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2)
2
218Foot-and-mouth disease virus
Find proteins for Q84771 (Foot-and-mouth disease virus)
Go to UniProtKB:  Q84771
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3)
3
220Foot-and-mouth disease virus
Find proteins for Q84771 (Foot-and-mouth disease virus)
Go to UniProtKB:  Q84771
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4)
4
85Foot-and-mouth disease virus
Find proteins for O90754 (Foot-and-mouth disease virus)
Go to UniProtKB:  O90754
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Work: 0.169 
  • Space Group: I 2 3
Unit Cell:
Length (Å)Angle (°)
a = 345.000α = 90.00
b = 345.000β = 90.00
c = 345.000γ = 90.00
Software Package:
Software NamePurpose
X-PLORrefinement
X-PLORphasing
X-PLORmodel building

Structure Validation

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Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1994-01-31
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance