1BBT

METHODS USED IN THE STRUCTURE DETERMINATION OF FOOT AND MOUTH DISEASE VIRUS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Work: 0.169 
  • R-Value Observed: 0.169 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Methods used in the structure determination of foot-and-mouth disease virus.

Fry, E.Acharya, R.Stuart, D.

(1993) Acta Crystallogr A 49: 45-55

  • DOI: 10.1107/s0108767392005737
  • Primary Citation of Related Structures:  
    1BBT

  • PubMed Abstract: 
  • The structure of foot-and-mouth disease virus (FMDV) strain O1 BFS 1860 has been determined to 2.9 A resolution using the molecular-replacement method [Acharya, Fry, Stuart, Fox, Rowlands & Brown (1989). Nature (London), 337, 709-716]. Crystals of the virus with average dimensions 0 ...

    The structure of foot-and-mouth disease virus (FMDV) strain O1 BFS 1860 has been determined to 2.9 A resolution using the molecular-replacement method [Acharya, Fry, Stuart, Fox, Rowlands & Brown (1989). Nature (London), 337, 709-716]. Crystals of the virus with average dimensions 0.12 x 0.06 x 0.12 mm belong to space group I23, a = 345 A with 1/12 of the icosahedral particle per asymmetric unit giving fivefold noncrystallographic redundancy. Oscillation diffraction photographs were collected at the SERC Synchrotron Radiation Source at Daresbury in accordance with strict disease security regulations. The ambiguity in particle orientation was resolved using a self-rotation function and starting estimates of the phases to 8 A were derived from the known structures of two picornaviruses similarly oriented in the I23 unit cell. The phases were refined and extended using iterative averaging and solvent flattening with the implementation of a simple automatic envelope-determination procedure to increase the phasing power available.


    Related Citations: 
    • The Three-Dimensional Structure of Foot-and-Mouth Disease Virus
      Acharya, R., Fry, E., Logan, D., Stuart, D., Brown, F., Fox, G., Rowlands, D.
      (1990) New Aspects Of Positive-strand Rna Viruses --: 211
    • Architecture and Topography of an Aphthovirus
      Fry, E., Logan, D., Acharya, R., Fox, G., Rowlands, D., Brown, F., Stuart, D.
      (1990) Semin Virol 1: 439
    • Structural and Serological Evidence for a Novel Mechanism of Antigenic Variation in Foot-and-Mouth Disease Virus
      Parry, N., Fox, G., Rowlands, D., Brown, F., Fry, E., Acharya, R., Logan, D., Stuart, D.
      (1990) Nature 347: 569
    • Structure of Foot-and-Mouth Disease Virus
      Acharya, R., Fry, E., Logan, D., Stuart, D.I., Fox, G., Rowlands, D., Brown, F.
      (1990) Use Of X-ray Crystallography In The Design Of Antiviral Agents --: 161
    • The Structure of Foot-and-Mouth Disease Virus: Implications for its Physical and Biological Properties
      Acharya, R., Fry, E., Stuart, D., Fox, G., Rowlands, D., Brown, F.
      (1990) Vet Microbiol 23: 21
    • The Three-Dimensional Structure of Foot-and-Mouth Disease Virus at 2.9 Angstroms Resolution
      Acharya, R., Fry, E., Stuart, D., Fox, G., Rowlands, D., Brown, F.
      (1989) Nature 337: 709
    • Implications of the Three-Dimensional Structure of Foot-and-Mouth Disease Virus for its Antigenicity and Cell Attachment
      Acharya, R., Fry, E., Stuart, D., Fox, G., Rowlands, D., Brown, F.
      (1989) Vaccines 89: Modern Approaches To New Vaccines Including Prevention Of Aids --: 1
    • Crystallization and Preliminary X-Ray Diffraction Analysis of Foot-and-Mouth Disease Virus
      Fox, G., Stuart, D., Acharya, K.R., Fry, E., Rowlands, D., Brown, F.
      (1987) J Mol Biol 196: 591

    Organizational Affiliation

    Laboratory of Molecular Biophysics, Oxford, England.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1)A [auth 1]213Foot-and-mouth disease virusMutation(s): 0 
UniProt
Find proteins for Q84771 (Foot-and-mouth disease virus (isolate Bovine/Germany/O1Kaufbeuren/1966 serotype O))
Explore Q84771 
Go to UniProtKB:  Q84771
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2)B [auth 2]218Foot-and-mouth disease virusMutation(s): 0 
UniProt
Find proteins for Q84771 (Foot-and-mouth disease virus (isolate Bovine/Germany/O1Kaufbeuren/1966 serotype O))
Explore Q84771 
Go to UniProtKB:  Q84771
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3)C [auth 3]220Foot-and-mouth disease virusMutation(s): 0 
UniProt
Find proteins for Q84771 (Foot-and-mouth disease virus (isolate Bovine/Germany/O1Kaufbeuren/1966 serotype O))
Explore Q84771 
Go to UniProtKB:  Q84771
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4)D [auth 4]85Foot-and-mouth disease virusMutation(s): 0 
UniProt
Find proteins for O90754 (Foot-and-mouth disease virus)
Explore O90754 
Go to UniProtKB:  O90754
Protein Feature View
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Work: 0.169 
  • R-Value Observed: 0.169 
  • Space Group: I 2 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 345α = 90
b = 345β = 90
c = 345γ = 90
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
X-PLORphasing

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1994-01-31
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance