1AX8 | pdb_00001ax8

Human obesity protein, leptin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 
    0.283 (Depositor) 
  • R-Value Work: 
    0.185 (Depositor), 0.223 (DCC) 
  • R-Value Observed: 
    0.185 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 1AX8

This is version 1.4 of the entry. See complete history

Literature

Crystal structure of the obese protein leptin-E100.

Zhang, F.Basinski, M.B.Beals, J.M.Briggs, S.L.Churgay, L.M.Clawson, D.K.DiMarchi, R.D.Furman, T.C.Hale, J.E.Hsiung, H.M.Schoner, B.E.Smith, D.P.Zhang, X.Y.Wery, J.P.Schevitz, R.W.

(1997) Nature 387: 206-209

  • DOI: https://doi.org/10.1038/387206a0
  • Primary Citation Related Structures: 
    1AX8

  • PubMed Abstract: 

    Mutations in the obese gene (OB) or in the gene encoding the OB receptor(OB-R) result in obesity, infertility and diabetes in a variety of mouse phenotypes. The demonstration that OB protein (also known as leptin) can normalize body weight in ob/ob mice has generated enormous interest. Most human obesity does not appear to result from a mutant form of leptin: rather, serum leptin concentrations are increased and there is an apparent inability to transport it to the central nervous system (CNS). Injection of leptin into the CNS of overfed rodents resistant to peripheral administration was found to induce biological activity. Consequently, for the leptin to act as a weight-lowering hormone in human obesity, it appears that appropriate concentrations must be present in the CNS. This places a premium on understanding the structure of the hormone in order to design more potent and selective agonists. Here we report the crystal structure at 2.4A resolution of a human mutant OB protein (leptin-E100) that has comparable biological activity to wild type but which crystallizes more readily. The structure reveals a four-helix bundle similar to that of the long-chain helical cytokine family.


  • Organizational Affiliation
    • Research Technologies and Proteins, Endocrine Research Divisions, Lilly Research Laboratories, Eli Lilly and Company, Indianapolis, Indiana 46285, USA.zhang_faming@lilly.com

Macromolecule Content 

  • Total Structure Weight: 15.98 kDa 
  • Atom Count: 1,074 
  • Modeled Residue Count: 130 
  • Deposited Residue Count: 146 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
OBESITY PROTEIN146Homo sapiensMutation(s): 1 
Gene Names: OBESE GENE
UniProt & NIH Common Fund Data Resources
Find proteins for P41159 (Homo sapiens)
Explore P41159 
Go to UniProtKB:  P41159
PHAROS:  P41159
GTEx:  ENSG00000174697 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP41159
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free:  0.283 (Depositor) 
  • R-Value Work:  0.185 (Depositor), 0.223 (DCC) 
  • R-Value Observed: 0.185 (Depositor) 
Space Group: P 63
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 88.14α = 90
b = 88.14β = 90
c = 48.05γ = 120
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MLPHAREphasing
X-PLORrefinement

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1998-11-25
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance
  • Version 1.3: 2012-05-09
    Changes: Derived calculations
  • Version 1.4: 2024-11-20
    Changes: Data collection, Database references, Structure summary