1ARB | pdb_00001arb

THE PRIMARY STRUCTURE AND STRUCTURAL CHARACTERISTICS OF ACHROMOBACTER LYTICUS PROTEASE I, A LYSINE-SPECIFIC SERINE PROTEASE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.20 Å
  • R-Value Observed: 
    0.149 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 1ARB

This is version 1.4 of the entry. See complete history

Literature

The primary structure and structural characteristics of Achromobacter lyticus protease I, a lysine-specific serine protease.

Tsunasawa, S.Masaki, T.Hirose, M.Soejima, M.Sakiyama, F.

(1989) J Biological Chem 264: 3832-3839

  • Primary Citation Related Structures: 
    1ARB, 1ARC

  • PubMed Abstract: 

    The complete amino acid sequence of Achromobacter lyticus protease I (EC 3.4.21.50), which specifically hydrolyzes lysyl peptide bonds, has been established. This has been achieved by sequence analysis of the reduced and S-carboxymethylated protease and of peptides obtained by enzymatic digestion with Achromobacter protease I itself and Staphylococcus aureus V8 protease and by chemical cleavage with cyanogen bromide. The protease consists of 268 residues with three disulfide bonds, which have been assigned to Cys6-Cys216, Cys12-Cys80, and Cys36-Cys58. Comparison of the amino acid sequence of Achromobacter protease and other serine proteases of bacterial and mammalian origins has revealed that Achromobacter protease I is a mammalian-type serine protease of which the catalytic triad comprises His57, Asp113, and Ser194. It has also been shown that the protease has 9- and 26-residue extensions of the peptide chain at the N and C termini, respectively, and overall sequence homology is as low as 20% with bovine trypsin. The presence of a disulfide bridge between the N-terminal extension Cys6 and Cys216 close to the putative active site in the C-terminal region is thought to be responsible for the generation of maximal proteolytic function in the pH range 8.5-10.7 and enhanced stability to denaturation.


  • Organizational Affiliation
    • Institute for Protein Research, Osaka University, Japan.

Macromolecule Content 

  • Total Structure Weight: 27.76 kDa 
  • Atom Count: 2,077 
  • Modeled Residue Count: 263 
  • Deposited Residue Count: 268 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
ACHROMOBACTER PROTEASE I268Achromobacter lyticusMutation(s): 0 
EC: 3.4.21.50
UniProt
Find proteins for P15636 (Achromobacter lyticus)
Explore P15636 
Go to UniProtKB:  P15636
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP15636
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.20 Å
  • R-Value Observed: 0.149 (Depositor) 
Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 39.54α = 114.8
b = 40.36β = 113.73
c = 43.93γ = 74
Software Package:
Software NamePurpose
PROLSQrefinement

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1993-10-31
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-06-05
    Changes: Data collection, Database references, Other
  • Version 1.4: 2024-11-20
    Changes: Structure summary