1AGQ

GLIAL CELL-DERIVED NEUROTROPHIC FACTOR FROM RAT


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.203 
  • R-Value Observed: 0.203 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

X-ray structure of glial cell-derived neurotrophic factor at 1.9 A resolution and implications for receptor binding.

Eigenbrot, C.Gerber, N.

(1997) Nat Struct Biol 4: 435-438

  • DOI: 10.1038/nsb0697-435
  • Primary Citation of Related Structures:  
    1AGQ

  • PubMed Abstract: 
  • The crystal structure of glial cell-derived neurotrophic factor (GDNF) reveals two independent copies of the dimer that differ significantly through a hinge bending at the central, disulphide-rich region. GDNF is compared with other members of the TGF-beta family, and potential receptor binding surfaces are identified ...

    The crystal structure of glial cell-derived neurotrophic factor (GDNF) reveals two independent copies of the dimer that differ significantly through a hinge bending at the central, disulphide-rich region. GDNF is compared with other members of the TGF-beta family, and potential receptor binding surfaces are identified.


    Related Citations: 
    • The Cystine-Knot Growth-Factor Superfamily
      Sun, P.D., Davies, D.R.
      (1995) Annu Rev Biophys Biomol Struct 24: 269
    • A Glial Cell Line-Derived Neurotrophic Factor for Midbrain Dopaminergic Neurons
      Lin, L.F., Doherty, D.H., Lile, J.D., Bektesh, S., Collins, F.
      (1993) Science 260: 1130

    Organizational Affiliation

    Department of Biochemistry, University of British Columbia, Vancouver, Canada.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
GLIAL CELL-DERIVED NEUROTROPHIC FACTORA, B, C, D135Rattus norvegicusMutation(s): 0 
Gene Names: Gdnf
UniProt
Find proteins for Q07731 (Rattus norvegicus)
Explore Q07731 
Go to UniProtKB:  Q07731
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ07731
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.203 
  • R-Value Observed: 0.203 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 67.85α = 90
b = 67.55β = 115.94
c = 71.4γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
XSIGHTmodel building
X-PLORrefinement
XSIGHTphasing

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1997-06-05
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance