Biological Assembly 1  

 3D View: Structure | 1D-3D View | Validation Report

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 3.61 kDa 
• Atom Count: 255 
• Modelled Residue Count: 30 
• Deposited Residue Count: 30 
• Unique protein chains: 1

1ZR7

Solution structure of the first WW domain of FBP11

• PDB DOI: 10.2210/pdb1ZR7/pdb
• BMRB: 6721

• Classification: SIGNALING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2005-05-19 Released: 2006-05-30 
• Deposition Author(s): Kato, Y., Hino, Y., Tanokura, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function 

Literature

Solution structure and binding specificity of FBP11/HYPA WW domain as Group-II/III

Kato, Y., Hino, Y., Nagata, K., Tanokura, M.

(2006) Proteins 63: 227-234

• PubMed: 16463264 
• DOI: 10.1002/prot.20880
• Primary Citation of Related Structures:  
  1ZR7


• PubMed Abstract: 
  

The Group-II/III WW domains bind Pro-rich sequences, the most frequent protein motif found in eucaryotic genomes. We have proposed that the Group-II and -III WW domains be merged into a larger group because the members of each group have relatively wide specificity and bind to the common ligands [Kato et al., J Biol Chem 2004;279:31833-31841]. We have also proposed that Group-II/III has a common surface patch, the XP2 groove, to bind the ligands. The first WW domain of FBP11/HYPA is one of the Group-II/III WW domains. The solution structure of the 26 residue-long converged region exhibits an antiparallel triple stranded beta-sheet with a small hydrophobic core. The WW domain of FBP11/HYPA has both XP and XP2 grooves on its surface. Ligand titration by 1H-15N HSQC NMR spectra revealed that the WW domain of FBP11/HYPA binds all the peptides with the PL, PP, and PR motifs. The profile patterns of chemical shift perturbation were quite similar among the spectra titrated with all three ligands. In addition, the titration significantly shifts the signals of the residues that compose the XP2 groove. All these findings suggest the functional importance of the XP2 groove and group definition of Group-II/III of the WW domains.

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Organizational Affiliation: 

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo, Japan.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
huntingtin-interacting protein HYPA/FBP11	A	30	Homo sapiens	Mutation(s): 0  Gene Names: FBP11, PRPF40A, FLAF1, FNBP3, HIP10, HYPA, HSPC225
UniProt & NIH Common Fund Data Resources
Find proteins for O75400 (Homo sapiens) Explore O75400  Go to UniProtKB:  O75400
PHAROS:  O75400 GTEx:  ENSG00000196504

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function 
• OLDERADO: 1ZR7 Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2005-05-19 
• Released Date: 2006-05-30 
Deposition Author(s): Kato, Y., Hino, Y., Tanokura, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2006-05-30
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-02
  Changes: Database references, Derived calculations