1ZP8

HIV Protease with inhibitor AB-2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.326 
  • R-Value Work: 0.197 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

1,2,3-triazole as a peptide surrogate in the rapid synthesis of HIV-1 protease inhibitors.

Brik, A.Alexandratos, J.Lin, Y.C.Elder, J.H.Olson, A.J.Wlodawer, A.Goodsell, D.S.Wong, C.H.

(2005) Chembiochem 6: 1167-1169


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Pol polyprotein
A
99Human immunodeficiency virus 1Mutation(s): 0 
Gene Names: pol
Find proteins for O92139 (Human immunodeficiency virus 1)
Go to UniProtKB:  O92139
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
AB2
Query on AB2

Download SDF File 
Download CCD File 
A
[1-((1S,2R)-1-BENZYL-2-HYDROXY-3-{ISOBUTYL[(4-METHOXYPHENYL)SULFONYL]AMINO}PROPYL)-1H-1,2,3-TRIAZOL-4-YL]METHYL (1R,2R)-2-HYDROXY-2,3-DIHYDRO-1H-INDEN-1-YLCARBAMATE
C34 H41 N5 O7 S
MEWAZRJLRMEJDV-LDLFXXLYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
AB2Ki: 1.7 nM BINDINGMOAD
AB2Ki: 1.7 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.326 
  • R-Value Work: 0.197 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 63.100α = 90.00
b = 63.100β = 90.00
c = 82.100γ = 120.00
Software Package:
Software NamePurpose
SHELXrefinement
PDB_EXTRACTdata extraction
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing
SHELXL-97refinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2005-06-21
    Type: Initial release
  • Version 1.1: 2008-04-30
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Derived calculations, Version format compliance