Crystal Structure of Human Liver GAPDH

Experimental Data Snapshot

  • Resolution: 2.50 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.211 

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Ligand Structure Quality Assessment 

This is version 1.4 of the entry. See complete history


Crystal Structure Analysis of Human liver GAPDH

Ismail, S.A.Park, H.W.

To be published.

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Glyceraldehyde-3-phosphate dehydrogenase, liverA [auth O], B [auth P], D [auth Q], C [auth R]338Homo sapiensMutation(s): 0 
Gene Names: GAPDGAPDHCDABP0047OK/SW-cl.12
EC: (PDB Primary Data), 2.6.99 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P04406 (Homo sapiens)
Explore P04406 
Go to UniProtKB:  P04406
PHAROS:  P04406
Protein Feature View
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAD (Subject of Investigation/LOI)
Query on NAD

Download Ideal Coordinates CCD File 
E [auth O], F [auth P], G [auth R], H [auth Q]NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Resolution: 2.50 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.211 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 124.5α = 90
b = 132.31β = 90
c = 86.037γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
SCALEPACKdata scaling
HKL-2000data reduction

Structure Validation

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Ligand Structure Quality Assessment  

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2005-05-24
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2014-11-12
    Changes: Structure summary
  • Version 1.4: 2019-01-16
    Changes: Data collection, Structure summary