1ZL9 | pdb_00001zl9

Crystal Structure of a major nematode C.elegans specific GST (CE01613)

• PDB DOI: https://doi.org/10.2210/pdb1ZL9/pdb

• Classification: TRANSFERASE
• Organism(s): Caenorhabditis elegans
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2005-05-05 Released: 2005-05-17 
• Deposition Author(s): Kriksunov, I.A., Liu, Q., Schuller, D.J., Campbell, A.M., Barrett, J., Brophy, P.M., Hao, Q.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.01 Å
• R-Value Free: 
  0.209 (Depositor), 0.210 (DCC) 
• R-Value Work: 
  0.151 (Depositor), 0.150 (DCC) 
• R-Value Observed: 
  0.152 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of a major nematode C.elegans specific GST (CE01613)

Kriksunov, I.A., Liu, Q., Schuller, D.J., Campbell, A.M., Barrett, J., Brophy, P.M., Hao, Q.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 47.17 kDa 
• Atom Count: 3,797 
• Modeled Residue Count: 414 
• Deposited Residue Count: 414 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
glutathione S-transferase 5	A, B	207	Caenorhabditis elegans	Mutation(s): 0  Gene Names: gst-5, CE01613 EC: 2.5.1.18
UniProt
Find proteins for Q09596 (Caenorhabditis elegans) Explore Q09596  Go to UniProtKB:  Q09596

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GSH	C [auth A], D [auth B]	GLUTATHIONE C10 H17 N3 O6 S RWSXRVCMGQZWBV-WDSKDSINSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.01 Å
• R-Value Free:  0.209 (Depositor), 0.210 (DCC) 
• R-Value Work:  0.151 (Depositor), 0.150 (DCC) 
• R-Value Observed: 0.152 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.96	α = 90
b = 88.272	β = 90
c = 93.596	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
Adxv	data processing
DENZO	data reduction
SCALEPACK	data scaling
AMoRE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-05-17 
Deposition Author(s): Kriksunov, I.A., Liu, Q., Schuller, D.J., Campbell, A.M., Barrett, J., Brophy, P.M., Hao, Q.

Revision History  

• Version 1.0: 2005-05-17
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2011-12-14
  Changes: Non-polymer description
• Version 1.4: 2017-10-11
  Changes: Refinement description
• Version 1.5: 2023-08-23
  Changes: Data collection, Database references, Derived calculations, Refinement description