Download MendeleyCrystal structure of Oxidoreductase (TM0312) from Thermotoga maritima at 2.50 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
1ZH8 | pdb_00001zh8
Crystal structure of Oxidoreductase (TM0312) from Thermotoga maritima at 2.50 A resolution
- PDB DOI: https://doi.org/10.2210/pdb1ZH8/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Thermotoga maritima MSB8
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2005-04-22 Released: 2005-05-10
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.237 (Depositor), 0.229 (DCC)
- R-Value Work: 0.194 (Depositor), 0.196 (DCC)
- R-Value Observed: 0.196 (Depositor)
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| oxidoreductase | 340 | Thermotoga maritima MSB8 | Mutation(s): 7 Gene Names: TM0312 EC: 1.1.1 |  | |
UniProt | |||||
Find proteins for Q9WYE8 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9WYE8 Go to UniProtKB: Q9WYE8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9WYE8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAP Query on NAP | D [auth A], K [auth B] | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H28 N7 O17 P3 XJLXINKUBYWONI-NNYOXOHSSA-N |  | ||
| EDO Query on EDO | E [auth A], F [auth A], G [auth A], H [auth A], I [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| NA Query on NA | C [auth A], J [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.237 (Depositor), 0.229 (DCC)
- R-Value Work: 0.194 (Depositor), 0.196 (DCC)
- R-Value Observed: 0.196 (Depositor)
Diffraction Data: https://doi.org/10.18430/M31ZH8
Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 64.849 | α = 90 |
| b = 63.088 | β = 104.88 |
| c = 101.172 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SCALA | data scaling |
| PDB_EXTRACT | data extraction |
| MOSFLM | data reduction |
| CCP4 | data scaling |
| SOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2005-05-10 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2005-05-10
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.3: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary
