1ZBJ

Inferential Structure Determination of the Fyn SH3 domain using NOESY data from a 15N,H2 enriched protein


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 10000 
  • Conformers Submitted: 20 
  • Selection Criteria: High posterior probability structures 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Inferential Structure Determination

Rieping, W.Habeck, M.Nilges, M.

(2005) Science 309: 303-306

  • DOI: 10.1126/science.1110428
  • Primary Citation of Related Structures:  
    1ZBJ

  • PubMed Abstract: 
  • Macromolecular structures calculated from nuclear magnetic resonance data are not fully determined by experimental data but depend on subjective choices in data treatment and parameter settings. This makes it difficult to objectively judge the precision of the structures ...

    Macromolecular structures calculated from nuclear magnetic resonance data are not fully determined by experimental data but depend on subjective choices in data treatment and parameter settings. This makes it difficult to objectively judge the precision of the structures. We used Bayesian inference to derive a probability distribution that represents the unknown structure and its precision. This probability distribution also determines additional unknowns, such as theory parameters, that previously had to be chosen empirically. We implemented this approach by using Markov chain Monte Carlo techniques. Our method provides an objective figure of merit and improves structural quality.


    Related Citations: 
    • Some NMR Experiments and a Structure Determination Employing a [15N,2H] Enriched Protein
      Mal, T.K., Matthews, S.J., Kovacs, H., Campbell, I.D., Boyd, J.
      (1998) J Biomol NMR 12: 259

    Organizational Affiliation

    Unité de Bioinformatique Structurale, Institut Pasteur, CNRS URA 2185, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15, France.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Proto-oncogene tyrosine-protein kinase FYNA59Homo sapiensMutation(s): 0 
Gene Names: FYN
EC: 2.7.1.112 (PDB Primary Data), 2.7.10.2 (UniProt)
Find proteins for P06241 (Homo sapiens)
Explore P06241 
Go to UniProtKB:  P06241
NIH Common Fund Data Resources
PHAROS:  P06241
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 10000 
  • Conformers Submitted: 20 
  • Selection Criteria: High posterior probability structures 
  • OLDERADO: 1ZBJ Olderado

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2005-05-03
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance