1Z3H | pdb_00001z3h

The exportin Cse1 in its cargo-free, cytoplasmic state


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 
    0.288 (Depositor), 0.286 (DCC) 
  • R-Value Work: 
    0.241 (Depositor), 0.239 (DCC) 
  • R-Value Observed: 
    0.287 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 1Z3H

This is version 1.3 of the entry. See complete history

Literature

The structure of the nuclear export receptor cse1 in its cytosolic state reveals a closed conformation incompatible with cargo binding

Cook, A.Fernandez, E.Lindner, D.Ebert, J.Schlenstedt, G.Conti, E.

(2005) Mol Cell 18: 355-367

  • DOI: https://doi.org/10.1016/j.molcel.2005.03.021
  • Primary Citation Related Structures: 
    1Z3H

  • PubMed Abstract: 

    Cse1 mediates nuclear export of importin alpha, the nuclear localization signal (NLS) import adaptor. We report the 3.1 A resolution structure of cargo-free Cse1, representing this HEAT repeat protein in its cytosolic state. Cse1 is compact, consisting of N- and C-terminal arches that interact to form a ring. Comparison with the structure of cargo-bound Cse1 shows a major conformational change leading to opening of the structure upon cargo binding. The largest structural changes occur within a hinge region centered at HEAT repeat 8. This repeat contains a conserved insertion that connects the RanGTP and importin alpha contact sites and that is essential for binding. In the cargo-free state, the RanGTP binding sites are occluded and the importin alpha sites are distorted. Mutations that destabilize the N- to C-terminal interaction uncouple importin alpha and Ran binding, suggesting that the closed conformation prevents association with importin alpha.


  • Organizational Affiliation
    • European Molecular Biology Laboratory, Meyerhofstrasse 1, D-69117 Heidelberg, Germany.

Macromolecule Content 

  • Total Structure Weight: 221.08 kDa 
  • Atom Count: 14,787 
  • Modeled Residue Count: 1,839 
  • Deposited Residue Count: 1,936 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Importin alpha re-exporter
A, B
968Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: Cse1
UniProt
Find proteins for P33307 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P33307 
Go to UniProtKB:  P33307
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP33307
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
MG

Query on MG



Download:Ideal Coordinates CCD File
C [auth A]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free:  0.288 (Depositor), 0.286 (DCC) 
  • R-Value Work:  0.241 (Depositor), 0.239 (DCC) 
  • R-Value Observed: 0.287 (Depositor) 
Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 162.52α = 90
b = 113.04β = 90
c = 122.97γ = 90
Software Package:
Software NamePurpose
SHARPphasing
SOLOMONphasing
CNSrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction
CCP4data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2005-05-10
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-03-13
    Changes: Data collection, Database references, Derived calculations