1YQF | pdb_00001yqf

Hypothetical protein from leishmania major unknown function sequence homologue to human p32 protein

PDB DOI: https://doi.org/10.2210/pdb1YQF/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Leishmania major
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2005-02-01 Released: 2005-02-22
Deposition Author(s): Caruthers, J., Merritt, E.A., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.274 (Depositor), 0.244 (DCC)
R-Value Work:
0.255 (Depositor), 0.237 (DCC)

wwPDB Validation 3D Report Full Report

Validation slider image for 1YQF

This is version 1.4 of the entry. See complete history.

Literature

Hypothetical protein from leishmania major unknown function sequence homologue to human p32 protein

Caruthers, J., Merritt, E.A., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

To be published.

Macromolecule Content

Total Structure Weight: 138.26 kDa
Atom Count: 8,839
Modeled Residue Count: 1,083
Deposited Residue Count: 1,218
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
hypothetical protein Lmaj011689	A, B, C, D, E A, B, C, D, E, F	203	Leishmania major	Mutation(s): 0
UniProt
Find proteins for Q4Q7K6 (Leishmania major) Explore Q4Q7K6 Go to UniProtKB: Q4Q7K6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q4Q7K6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.274 (Depositor), 0.244 (DCC)
R-Value Work: 0.255 (Depositor), 0.237 (DCC)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 64.738	α = 90
b = 113.91	β = 90.489
c = 87.858	γ = 90

Software Package:

Software Name	Purpose
EPMR	phasing
PDB_EXTRACT	data extraction
DM	phasing
REFMAC	refinement
Blu-Ice	data collection
ELVES	data scaling

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2005-02-22

Deposition Author(s):

Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

Revision History (Full details and data files)

Version 1.0: 2005-02-22
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Advisory, Refinement description, Version format compliance
Version 1.3: 2017-10-11
Changes: Refinement description
Version 1.4: 2024-02-14
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.